Position
| Chromosome | Chr3 |
| Start | 8378598 |
| End | 8397526 |
| Strand | - |
view in Gbrowse: Chr3:8378598..8397526
Most similar sequence in NCBI nr database
| Accession | Description | E-value | Score |
|---|---|---|---|
| XP_004931765.1 | succinate dehydrogenase | 0.0 | 1366 |
ORF sequence (1968 bp)
ATGAGTGCATTAATGAAAGCGGCAGTTTCCCGCAGTCCTGCGTCACTGGCATCATACTTATATAGAAATATTCACGTGGCTGCTTCTGGTGCTACTTCTAAAGATGCTTCAGTTACAACAAATATGACTAAAGCATACACAGTAATTGACCACAAACATGATGCATTAGTTATTGGGGCTGGTGGAGCAGGACTTCGAGCAGCCTTTGGTCTTGTCCAAGAAGGATTTAAAACTGCTGTCGTAACTAAGTTGTTCCCTACAAGATCACATACTGTTGCTGCACAGGGTGGAATTAATGCTGCTTTGGGAAACATGGAGGAAGACAGTTGGCTCTGGCATATGTATGACACAGTTAAAGGTTCCGACTGGCTTGGAGATCAGGATGCCATTCACTACATGACTAAAGAAGCGCCTCATGCAGTAATCGAACTGGACAACTACGGAATGCCATTCTCCCGCACCCCGGAGGGAAAGATTTACCAGAGGGCCTTCGGAGGACAGTCTCTCAAGTTCGGAAAGGGAGGACAAGCTCATAGATGCTGCGCCGTAGCTGACAGAACCGGGCACTCCCTCCTTCACACGCTGTACGGCCAATCACTCCGCTACGACTGCGAATACTTCATCGAGTATTTCGCTCTCGATTTGCTAATGGAAGACGGAGTCTGCAAGGGATGCATCGCCATCAATCTCGAAGACGGAACACTGCACAGGTTCCAAGCGAAGAATACGATCTTGGCCACGGGAGGCACCGGCCGCTCATACTTCAGTTGCACGTCGGCGCACACCTGCACAGGGGACGGCACCGCCATGGCCGCTCGAGTCGGTCTGCAGAACGAGGATATGGAGTTTGTGCAGTTCCATCCAACTGGTATCTACGGCGCCGGTTGCCTGATGACCGAGGGTTGTCGTGGCGAGGGCGGCTTCCTGGTCAACTCGAAGGGCGAACGGTTCATGGAACGTTACGCGCCCGTCGCCAAGGACCTGGCCAGTCGAGACGTGGTCTCGCGTGCTATGACGGTTGAAATTATGGAAGGTCGCGGTTGCGGCCCGGAGAAGGACCACGTTCACCTACAGTTGCACCACCTGCCTCCCGAACAACTGAAGCAGCGTCTGCCTGGCATCTCGGAGACGGCCATGATCTTCGCTGGGGTCGACGTCACTAAGGAACCCATTCCTGTGCTACCGACAGTGCACTATAATATGGGTGGTACTCCCACCAATTTCCGCGGGGAGGTGATCACGCACCGTGGCGGCGCGGACCGCGTGGTGGCGGGGCTGCTGGCGGCGGGCGAGGCGTCGTGCGCCAGCGTGCACGGCGCCAACCGGCTGGGCGCCAACTCGCTGCTGGACATCGTGGTGTTCGGCCGCGCCTGCGCACTCACCGTGGCCGACACGGCGCGCCCCGGGGACCCGCAGCCGCCGCTCGCGCCCACAACGGGCGAGGCGAGCATTGCCAACTTGGACAGCATCAGATACGCCAATGGTTCGATCTCTACAGCCGACCTTAGACTTAGAATGCAAAAATGCATGCAGAAGAATGCCGCCGTCTTTAGACAGAAGAGCACCTTGGAGGAAGGTCAACGTCAAATTCACGAGATCTACAAGCAGATAAAAGACGTGAAGGTGTCCGACCGGTCCTTGATCTGGAACAGTGATCTAGTGGAGACGCTGGAGCTTCAGAATCTTCTCATCAACTCGGTACAGATCGTGGAGGGAGCACTGGCGCGGGAGGAGTCGCGCGGAGCCCACGCCCGAGAGGACTTCAAGACCAGACGCGACGAGTACGACTACTCTAAACCTCTCGAGGGACAGAGTAAGTTGCCGTTCGAGCAGCACTGGAGGAAGCACACGCTCGCCGAGACGGACCCCGCGACCGGCGACACGCGCCTCACCTACCGCCCCGTCATCGACCGCACGCTCGACGCCGCCGAGTGCAGCACCGTGCCGCCCGTCATCCGCACCTACTAG
Protein sequence (655 aa)
MSALMKAAVSRSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHDALVIGAGGAGLRAAFGLVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCEYFIEYFALDLLMEDGVCKGCIAINLEDGTLHRFQAKNTILATGGTGRSYFSCTSAHTCTGDGTAMAARVGLQNEDMEFVQFHPTGIYGAGCLMTEGCRGEGGFLVNSKGERFMERYAPVAKDLASRDVVSRAMTVEIMEGRGCGPEKDHVHLQLHHLPPEQLKQRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGTPTNFRGEVITHRGGADRVVAGLLAAGEASCASVHGANRLGANSLLDIVVFGRACALTVADTARPGDPQPPLAPTTGEASIANLDSIRYANGSISTADLRLRMQKCMQKNAAVFRQKSTLEEGQRQIHEIYKQIKDVKVSDRSLIWNSDLVETLELQNLLINSVQIVEGALAREESRGAHAREDFKTRRDEYDYSKPLEGQSKLPFEQHWRKHTLAETDPATGDTRLTYRPVIDRTLDAAECSTVPPVIRTY
Corresponding sequences in KAIKObase version 1
BMgn009000Domains and motifs
| Database | ID | Description | Start | End | Evalue | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11632 | - | 35 | 655 | 0.0 | - |
| PANTHER | PTHR11632:SF51 | - | 35 | 655 | 0.0 | - |
| SUPERFAMILY | SSF51905 | - | 42 | 479 | 1.3e-74 | IPR036188 |
| PIRSF | PIRSF000171 | - | 43 | 602 | 1.7e-34 | - |
| TIGRFAM | TIGR01816 | sdhA_forward: succinate dehydrogenase, flavoprotein subunit | 51 | 655 | 0.0 | IPR011281 |
| Gene3D | 3.50.50.60 | - | 54 | 459 | 0.0 | IPR036188 |
| Pfam | PF00890 | FAD binding domain | 54 | 448 | 2.9e-121 | IPR003953 |
| TIGRFAM | TIGR01812 | sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit | 54 | 598 | 0.0 | IPR014006 |
| ProSitePatterns | PS00504 | Fumarate reductase / succinate dehydrogenase FAD-binding site. | 88 | 97 | - | IPR003952 |
| SUPERFAMILY | SSF56425 | - | 281 | 399 | 5.4e-43 | IPR027477 |
| Gene3D | 3.90.700.10 | - | 291 | 394 | 0.0 | IPR027477 |
| Gene3D | 1.20.58.100 | - | 477 | 590 | 1.0e-38 | - |
| SUPERFAMILY | SSF46977 | - | 494 | 655 | 6.7e-43 | IPR037099 |
| Pfam | PF02910 | Fumarate reductase flavoprotein C-term | 503 | 655 | 2.2e-40 | IPR015939 |
| Gene3D | 4.10.80.40 | - | 591 | 655 | 5.0e-32 | - |
InterPro assignment
| InterPro ID | InterPro description |
|---|---|
| IPR003952 | Fumarate reductase/succinate dehydrogenase, FAD-binding site |
| IPR003953 | FAD-dependent oxidoreductase 2, FAD binding domain |
| IPR011281 | Succinate dehydrogenase, flavoprotein subunit |
| IPR014006 | Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
| IPR015939 | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal |
| IPR027477 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily |
| IPR036188 | FAD/NAD(P)-binding domain superfamily |
| IPR037099 | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily |
Gene ontology (GO) assignment
| GO category | GO ID | GO description |
|---|---|---|
| biological process | GO:0006099 | tricarboxylic acid cycle |
| molecular function | GO:0016491 | oxidoreductase activity |
| molecular function | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
| biological process | GO:0022900 | electron transport chain |
| molecular function | GO:0050660 | flavin adenine dinucleotide binding |
| biological process | GO:0055114 | oxidation-reduction process |
| Species | Accession |
|---|---|
| Danaus plexippus | DPOGS200427 |
| Heliconius melpomene | HMEL002503g1.t1 |
| Manduca sexta | XP_030040475.1 XP_030040476.1 |
| Plutella xylostella | g18958.t1 g18961.t1 |
| Spodoptera frugiperda (corn) | GSSPFG00001781001.1-PA |
| Spodoptera frugiperda (rice) | SFRICE031437-PA |
| Acyrthosiphon pisum | XP_001950339.2 |
| Aedes aegypti | AAEL010608-PB AAEL010608-PC |
| Anopheles gambiae | AGAP010429-PA |
| Apis mellifera | XP_006568498.2 XP_623065.2 |
| Drosophila melanogaster | FBpp0085736 FBpp0085737 FBpp0085738 |
| Tribolium castaneum | XP_008196617.1 |
| Homo sapiens | NP_004159.2 |
| Mus musculus | NP_075770.1 |
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO01346:
Expression data of alternative splicing isoform(s) of KWMTBOMO01346:
MSTRG.16812.1 (position: Chr3:8377508..8397526)
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO01346:
Expression data of alternative splicing isoform(s) of KWMTBOMO01346:
MSTRG.16812.1 (position: Chr3:8377508..8397526)