KWMTBOMO05605

Position

ChromosomeChr10
Start6136445
End6167293
Strand+

view in Gbrowse: Chr10:6136445..6167293

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
XP_028037877.1ecdysone receptor isoform X10.01264

ORF sequence (1821 bp)

ATGAGAGTCGAGAACGTGGATAACGTATCGTTTGCTTTGAACGGACGCGCTGACGAGTGGTGTATGTCTGTAGAGACGCGTTTAGATAGTTTAGTGCGAGAAAAAAGTGAAGTGAAAGCCTACGTCGGAGGATGTCCCTCGGTAATCACGGATGCTGGAGCGTATGACGCGCTCTTCGACATGAGACGCCGCTGGTCTAATAACGGTGGCTTCCCGCTGCGAATGCTTGAAGAGAGCTCTTCAGAAGTGACATCGTCTTCGGCACTGGGTTTGCCACCGGCCATGGTTATGTCGCCGGAATCCTTGGCGTCGCCCGAGTATGGAGCCCTCGAGCTATGGAGCTACGATGACGGAATCACTTATAATACAGCCCAGTCTCTGCTGGGTGCATGCAATATGCAACAGCAACAGCTACAACCTCAGCAACCACATCCAGCACCACCGACGCTCCCCACGATGCCTTTACCAATGCCTCCCACAACACCGAAATCAGAAAATGAATCGATGTCATCAGGTCGAGAGGAACTTTCGCCGGCTTCAAGCATAAATGGCTGCAGTGCTGATGCTGACGCCAGACGGCAGAAGAAAGGTCCTGCACCTCGACAGCAAGAGGAGCTATGTCTTGTCTGCGGCGACAGAGCCTCCGGATACCACTACAACGCACTGACGTGTGAAGGATGCAAAGGATTCTTCAGGCGGAGTGTCACCAAAAACGCAGTATATATTTGTAAATTTGGACATGCCTGTGAAATGGATATGTACATGAGGAGGAAATGTCAAGAGTGTCGATTAAAGAAATGTCTAGCGGTAGGAATGAGGCCTGAATGTGTCATACAGGAGCCCAGTAAAAATAAAGACAGGCAAAGACAAAAGAAAGACAAAGGAATATTATTACCTGTTAGTACGACCACAGTCGAAGACCACATGCCCCCGATCATGCAATGTGATCCACCTCCGCCCGAGGCCGCCAGGATTCACGAAGTCGTCCCGAGGTATCTTTCGGAGAAGCTGATGGAGCAGAACAGGCAGAAGAACATACCACCATTGTCGGCGAATCAGAAGTCTCTGATCGCGAGGCTCGTGTGGTACCAGGAGGGATATGAGCAGCCCTCCGACGAGGATCTCAAAAGAGTAACGCAGACTTGGCAGTCGGATGAAGAGGACGAGGAATCCGATCTACCCTTCCGCCAGATCACGGAGATGACGATCTTAACGGTCCAGTTGATCGTCGAGTTCGCCAAGGGTCTACCGGGCTTTTCGAAGATATCACAGTCTGATCAAATCACCTTATTAAAAGCCTCGTCCAGCGAGGTGATGATGCTGCGGGTGGCGAGGCGATACGACGCCGCGTCCGACAGCGTGCTGTTCGCCAACAACAAGGCGTACACGCGCGACAACTACCGCAAGGCGGGCATGGCCTACGTCATCGAAGACCTCCTACACTTCTGCCGGTGCATGTTCGCGATGGGCATGGACAATGTGCACTTTGCACTGCTCACGGCCATCGTTATATTCTCAGATCGGCCCGGGCTCGAGCAGCCGTCGCTGGTAGAAGAGATCCAGAGATACTACCTGAACACGTTGCGAATTTACATCATCAACCAGAACAGCGCGTCGTCGCGCTGCGCCGTGATCTACGGCAGGATCCTGAGCGTGCTGACCGAGCTACGCACGCTCGGCACGCAAAACTCCAACATGTGCATCTCGCTGAAGCTGAAGAACAGGAAGCTGCCGCCGTTCCTCGAGGAGATCTGGGACGTGGCGGAGGTGGCCACGACGCATCCCACGGTGCTGCCGCCCACCAACCCGGTGGTGCTATAG

Protein sequence (606 aa)

MRVENVDNVSFALNGRADEWCMSVETRLDSLVREKSEVKAYVGGCPSVITDAGAYDALFDMRRRWSNNGGFPLRMLEESSSEVTSSSALGLPPAMVMSPESLASPEYGALELWSYDDGITYNTAQSLLGACNMQQQQLQPQQPHPAPPTLPTMPLPMPPTTPKSENESMSSGREELSPASSINGCSADADARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHMPPIMQCDPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQPSDEDLKRVTQTWQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAASDSVLFANNKAYTRDNYRKAGMAYVIEDLLHFCRCMFAMGMDNVHFALLTAIVIFSDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGRILSVLTELRTLGTQNSNMCISLKLKNRKLPPFLEEIWDVAEVATTHPTVLPPTNPVVL

Corresponding sequences in KAIKObase version 1

BMgn006766

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
PANTHERPTHR24082- 1485860.0 -
PANTHERPTHR24082:SF331- 1485860.0 -
Gene3D3.30.50.10- 1992811.6e-32 IPR013088
CDDcd07161NR_DBD_EcR 2042943.6e-52 -
ProSiteProfilesPS51030Nuclear hormone receptors DNA-binding domain profile. 20427919.304 IPR001628
SMARTSM00399- 2042754.8e-38 IPR001628
SUPERFAMILYSSF57716- 2052841.7e-28 -
PfamPF00105Zinc finger, C4 type (two domains) 2062739.8e-30 IPR001628
ProSitePatternsPS00031Nuclear hormones receptors DNA-binding region signature. 207233- IPR001628
Gene3D1.10.565.10- 3465917.1e-98 IPR035500
ProSiteProfilesPS51843Nuclear receptor (NR) ligand-binding (LBD) domain profile. 35258953.332 IPR000536
CDDcd06938NR_LBD_EcR 3535875.3e-147 IPR041889
SUPERFAMILYSSF48508- 3635871.4e-68 IPR035500
PfamPF00104Ligand-binding domain of nuclear hormone receptor 3915662.4e-21 IPR000536
SMARTSM00430- 4005602.3e-36 IPR000536

InterPro assignment

InterPro IDInterPro description
IPR000536Nuclear hormone receptor, ligand-binding domain
IPR001628Zinc finger, nuclear hormone receptor-type
IPR013088Zinc finger, NHR/GATA-type
IPR035500Nuclear hormone receptor-like domain superfamily
IPR041889Ecdysone receptor, ligand-binding domain

Gene ontology (GO) assignment

GO categoryGO IDGO description
molecular functionGO:0003700DNA-binding transcription factor activity
cellular componentGO:0005634nucleus
biological processGO:0006355regulation of transcription, DNA-templated
molecular functionGO:0008270zinc ion binding
molecular functionGO:0043565sequence-specific DNA binding
SpeciesAccession
Danaus plexippusDPOGS208114
Heliconius melpomeneHMEL012265g1.t1
HMEL012265g1.t2
HMEL012265g1.t3
Manduca sextaXP_030038451.1
Plutella xylostellag33274.t2
Spodoptera frugiperda (corn)GSSPFG00004951001.3-PA
Spodoptera frugiperda (rice)SFRICE028475-PA
Acyrthosiphon pisumNP_001152832.1
Aedes aegyptiAAEL019431-PB
Anopheles gambiaeAGAP029539-PA
Apis melliferaNP_001091685.2
NP_001152827.1
XP_006568116.2
XP_016768787.2
Drosophila melanogasterFBpp0085353
Tribolium castaneumNP_001107650.1
NP_001135390.1
XP_008197633.1
XP_008197634.1
Homo sapiensNP_001123573.1
NP_001123574.1
NP_001238863.1
NP_001238864.1
NP_001350524.1
NP_005684.2
XP_005252763.1
XP_005252770.1
XP_011518107.1
XP_011518108.1
XP_016872545.1
XP_024304052.1
XP_024304053.1
XP_024304054.1
XP_024304055.1
XP_024304056.1
XP_024304057.1
XP_024304058.1
XP_024304059.1
XP_024304060.1
XP_024304061.1
XP_024304062.1
XP_024304063.1
XP_024304066.1
XP_024304068.1
Mus musculusNP_001171201.1
NP_001342208.1
NP_038867.2
XP_006499230.1
XP_006499231.1
XP_030105325.1

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO05605:

Expression data of alternative splicing isoform(s) of KWMTBOMO05605:

MSTRG.1662.1 (position: Chr10:5897152..6171200)

MSTRG.1662.3 (position: Chr10:5898030..6171184)

MSTRG.1662.4 (position: Chr10:5976554..6171200)

MSTRG.1662.5 (position: Chr10:5976645..6171195)

MSTRG.1662.6 (position: Chr10:6136445..6171203)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO05605:

Expression data of alternative splicing isoform(s) of KWMTBOMO05605:

MSTRG.1662.1 (position: Chr10:5897152..6171200)

MSTRG.1662.3 (position: Chr10:5898030..6171184)

MSTRG.1662.4 (position: Chr10:5976554..6171200)

MSTRG.1662.5 (position: Chr10:5976645..6171195)

MSTRG.1662.6 (position: Chr10:6136445..6171203)