KWMTBOMO09033

Position

ChromosomeChr15
Start10090901
End10118811
Strand+

view in Gbrowse: Chr15:10090901..10118811

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
XP_004924686.1multidrug resistance protein 1A isoform X30.02602

ORF sequence (3807 bp)

ATGAAGGAAATCAAAGAAGACAATTGGGATCCTGGCCTAGGCGGTGACAAAAACAAATATAAAGTCAGCGGTTTCTCTGATGGCGATTATCAAAAAAGAAAGCAATCTGATAGTTCCGAAAAAAACGCCAAAGATGATGTGCCGAGCATTTCATTTTTTACGCTGTTTCGTTTCGCCACTACAACAGATGTTTTGTATATTATCATAGCCCTGGTATCATCGGCTGTGGCAGCCTGTTCCACGCCATTGAATACCTTGCTATTAGCTGACTTACTGCAAAGCATGGTGGATTTTGGCATCTCCGTAGTTCAAGAGAATCCAAATGGAGACGCATTTTTGGAATCACTTTTCTACTTCGCCGTGTATAATTCTATCATAGGCATACTGTTGGTCATTTTCACTTATATCGCAACGGTACTAATGAATATCGCAGCATATAATCAGGTATATAAAATAAGACAAGAATATCTCAAAGCAGCTTTGAACCAGGATTTCGAGTATTTTGATATCCATAAAACTGGGGATATAGCTACCAAGATAAACAGCGATATACTGAAATTAGAAGATGGCATTGGTGAAAAGCTGGCCACTTTCATATTTTACCAGTGCTCATTTATCAGTTCAATTATCATGGCGCTTATAAAAGGCTGGAAGCTGGCCCTCCTTTGTCTGATATCATTTCCGGTTACAATGACACTTGTTGGAGTAGCTGGACTGGTGGCTTCAAGGCTATCAAAGAAAGAAGCAATAGCGTCCGGTAAGGCCGGAGCGATCGCCGAAGAAGTGTTATCGTCTATTAGAACAGTGTACGCGTTTACGGGCATGCAAAAGGAAATCGAACGATATGAAAAATACCTTATAGAGGCGAGAAAGATCAATATTCAGAAAGGTCTTTTCAACGGTCTCGCTATGGGCTTCCTTTTCTTTTGTATATTCTGTGCGTACGCATTATCCTTCTGGTTCGGCTACAGACTTATGGTTGACGAACCAGAGAATTATGATGTATCAACAATGATCGCAGTTTTCTTTGGTGTAATGACCGGATCCGCTAATTTCGGTGTATCATCAACTCTAATGGAAGTGTTCGGTAGAGCCCGCGGTGCGGGTGCCCAAATCTTTAATTTAATTGATAATGTACCAATAATTAACCCATTGCGGAATCTCGGAGTCACGCCGCCATCCATTGATGGCAACATTGAGCTAAAAGATGTTGTATTTCATTATCCTTCTAGACCTGATGTACCAGTACTCAAAGGCGTAAACCTAAGGGTGAAAAGAGGGCAATCTGTCGCGCTTGTTGGACATTCGGGATGTGGAAAGTCAACGATCATACAACTCATATCTAGATATTATGATGTTATAGACGGAAATGTGTGCATTGATGGCAATGATGTTCGTCAACTGTCTGTTCGATGGCTTCGGTCTCAGATTGGTCTGGTCGGTCAAGAGCCTGCGCTTTTTAACATGACAGTTCGCCAAAACATTCGCTTTGGTCGTGAGGAAGCTACAGATCAAGACATCGAAGCAGCAGCAAAGCAGGCAAATGCTCACGAATTCATCATGAAACTTCCCAATGGTTACGATACGCTGGTTGGTGAAAGAGGTGCTTCGATATCTGGTGGACAAAAGCAAAGGATTGCTATAGCTCGAGCTTTAGTCAGAAATCCTCCTATTCTCCTCCTAGACGAAGCGACGAGCGCTCTAGATACGTCATCTGAAGCCAAAGTACAAAAGGCTTTAGATAAAGCCCAAGAAGGTCGCACAACAATTGTAGTGGCACACAGACTTTCAACTATCAGAAATGTTGATGTTATTTACGTTTTCAAAGAGGGCTCTGTAATTGAGACTGGTAACCACGATGAACTGATGAAGTTAAAAGGACATTACTACGATATGGTTATGCTGCAAACGTTCCCTGGAAGTGAGGAGGACGACGACAATAACGGAGACAACGAAAGTCGGCTGTCTCGAAAAATATCTAATATGAATATAAACGATGATGACGACATTATAGATATAAAAAATTATGGTGTTGAGGAACACAGTGACGTTCCAACTGATGTGTCATTCTGGAGAGTAGTCCGCTTAAATTCGCCAGAATGGAAATCCGTTTCTCTAGCCAGTTTTTGCGCTTTTCTTAGTGGATTTGCCATGCCTCTCATCGCAGTAATCTTTGGTGATTTTATTGGGATACTTTCAAATCCAGACGAAGAAAAAGTTTTAGCAGAAGTACAACGTTTCGCGTTGATATTCGTTGGCATAGGCTTATATTCTGGCGTTGCTAATTTCACCATGGTATTTTTGTACGCCATTGCTGGGGAACATCTAACGGAACGTTTGAGAAAGATGATGTTTGAAAAACTCCTTCAACAAGAAGTCGCATTTTATGACGACAAGAACAACACAACTGGAGCACTGTGCGCTAGATTGTCGGGTGAAGCAGCTGCTGTACAAGGGGCCACAGGGCAGCGTATCGGTACTGTATTGCAAGCAATCGGGACATTTGGTTTTGCTCTGGTACTTTCCTTAGTGTACGAATGGCGAGTGGGTCTAGTTGCTTTAACATTTATTCCAATATTGGTTTTTGTACTGTATAAAGAAGTAAGGATGGCCTACGCTGAATCCTTCGGAACTGCGAAGACAATGGAAGCTAGCTCAAAGACTGCGGTAGAGGCAGTGGCTAATGTACGAACAGTAGCCTCGTTGGGTGGAGAAACGAAAATCTTACAAGACTATATAATACAGTTATTGCCAGCACTTTTGTCAGCAAAGCGTGCTTCGCATTGGCGTGGTGTTGTCTTTGGACTTTCAAGATCTTTATTTAACTTCGTTATTGCTGCATCTCTGTACTACGGTGGTACTCTTATAGTGTATGAAAAAATCGAATATGAAGTTGTATTTAAGTCAGCCCAAGCTCTTCTCTTAGGTGCTTCATCTGCAGCACAGGCTTTCGCTTTTGCGCCCAATTTCCAAAAGGGAATCAAGGCAGCAGGACGGGTTGTTTCATTGCTAAACAGAGAGTCTAAAATTACCGATCCCCACGAACCAGTAACCAAGGACTTCTGTGGATCAGGTGAAGCGAGCATTCAAGCAGTTCAGTTTAAATACCCGAATCGTCCAGCCATACAGGTGCTTAAGAATTTCAATCTGGAAATTGAGAAGGGAAAAACATTTGCACTCGTCGGCAGTAGTGGCTGTGGTAAAAGTACTGTCATTCAACTTCTTCAAAGGTTCTATGATCCTGACGACGGCATTGTGGCTCAAGATGGTATTCCTCTACCGAAGCTTACACTTGCAAACGCAAGACAATCAATAGGATTCGTACAACAAGAACCAGTTCTGTTTGATAGAACTATCGGGGAGAACATAGCATATGGAAATAATGCAAAGAAAGTCAACATGGATGACATTATCGAGGCTGCAAAGCAAGCTAATATACATAACTTCATTACTTCGCTGCCTTTGGGTTACGAGACGAACATCGGTACTAAAGGCACTCAACTGTCTGGTGGACAGAAGCAAAGAATAGCTATAGCCAGAGCTTTGATAAGACGACCGAAAATGCTGTTGCTTGATGAAGCGACTAGCGCATTGGATACAGAGAGCGAGAAGGTTGTCCAGGAAGCGTTGGACGCTGCTAAAGCTGGTCGAACTTGCGTGATGATTGCCCACAGACTAAGCACCGTGCGTGATGCGGACAGCATTTGTGTTGTAAGCGACGGGAGAATAGCCGAGAAGGGCAAACACCACGAACTATTAGAACTTAAGGGCTTATACTATAACTTAAATAGACGTGCGCATTCATAG

Protein sequence (1268 aa)

MKEIKEDNWDPGLGGDKNKYKVSGFSDGDYQKRKQSDSSEKNAKDDVPSISFFTLFRFATTTDVLYIIIALVSSAVAACSTPLNTLLLADLLQSMVDFGISVVQENPNGDAFLESLFYFAVYNSIIGILLVIFTYIATVLMNIAAYNQVYKIRQEYLKAALNQDFEYFDIHKTGDIATKINSDILKLEDGIGEKLATFIFYQCSFISSIIMALIKGWKLALLCLISFPVTMTLVGVAGLVASRLSKKEAIASGKAGAIAEEVLSSIRTVYAFTGMQKEIERYEKYLIEARKINIQKGLFNGLAMGFLFFCIFCAYALSFWFGYRLMVDEPENYDVSTMIAVFFGVMTGSANFGVSSTLMEVFGRARGAGAQIFNLIDNVPIINPLRNLGVTPPSIDGNIELKDVVFHYPSRPDVPVLKGVNLRVKRGQSVALVGHSGCGKSTIIQLISRYYDVIDGNVCIDGNDVRQLSVRWLRSQIGLVGQEPALFNMTVRQNIRFGREEATDQDIEAAAKQANAHEFIMKLPNGYDTLVGERGASISGGQKQRIAIARALVRNPPILLLDEATSALDTSSEAKVQKALDKAQEGRTTIVVAHRLSTIRNVDVIYVFKEGSVIETGNHDELMKLKGHYYDMVMLQTFPGSEEDDDNNGDNESRLSRKISNMNINDDDDIIDIKNYGVEEHSDVPTDVSFWRVVRLNSPEWKSVSLASFCAFLSGFAMPLIAVIFGDFIGILSNPDEEKVLAEVQRFALIFVGIGLYSGVANFTMVFLYAIAGEHLTERLRKMMFEKLLQQEVAFYDDKNNTTGALCARLSGEAAAVQGATGQRIGTVLQAIGTFGFALVLSLVYEWRVGLVALTFIPILVFVLYKEVRMAYAESFGTAKTMEASSKTAVEAVANVRTVASLGGETKILQDYIIQLLPALLSAKRASHWRGVVFGLSRSLFNFVIAASLYYGGTLIVYEKIEYEVVFKSAQALLLGASSAAQAFAFAPNFQKGIKAAGRVVSLLNRESKITDPHEPVTKDFCGSGEASIQAVQFKYPNRPAIQVLKNFNLEIEKGKTFALVGSSGCGKSTVIQLLQRFYDPDDGIVAQDGIPLPKLTLANARQSIGFVQQEPVLFDRTIGENIAYGNNAKKVNMDDIIEAAKQANIHNFITSLPLGYETNIGTKGTQLSGGQKQRIAIARALIRRPKMLLLDEATSALDTESEKVVQEALDAAKAGRTCVMIAHRLSTVRDADSICVVSDGRIAEKGKHHELLELKGLYYNLNRRAHS

Corresponding sequences in KAIKObase version 1

BMgn007494

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
SUPERFAMILYSSF90123- 553802.2e-52 IPR036640
CDDcd18577ABC_6TM_Pgp_ABCB1_D1_like 673722.7e-93 -
PfamPF00664ABC transporter transmembrane region 673491.3e-55 IPR011527
ProSiteProfilesPS50929ABC transporter integral membrane type-1 fused domain profile. 6836440.359 IPR011527
PANTHERPTHR24221- 12112630.0 IPR039421
PANTHERPTHR24221:SF410- 12112630.0 -
SUPERFAMILYSSF52540- 3916361.1e-93 IPR027417
CDDcd03249ABC_MTABC3_MDL1_MDL2 3996362.0e-146 -
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 39963526.477 IPR003439
PfamPF00005ABC transporter 4175663.1e-35 IPR003439
SMARTSM00382- 4266121.7e-16 IPR003593
ProSitePatternsPS00211ABC transporters family signature. 538552- IPR017871
SUPERFAMILYSSF90123- 69210121.6e-52 IPR036640
CDDcd18578ABC_6TM_Pgp_ABCB1_D2_like 69510108.0e-103 -
PfamPF00664ABC transporter transmembrane region 7069771.2e-47 IPR011527
ProSiteProfilesPS50929ABC transporter integral membrane type-1 fused domain profile. 70699240.026 IPR011527
Gene3D3.40.50.300- 102312685.8e-91 -
SUPERFAMILYSSF52540- 102312646.1e-83 IPR027417
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 1029126523.703 IPR003439
CDDcd03249ABC_MTABC3_MDL1_MDL2 103212663.2e-128 -
PfamPF00005ABC transporter 104511963.2e-34 IPR003439
SMARTSM00382- 105412422.0e-17 IPR003593
ProSitePatternsPS00211ABC transporters family signature. 11681182- IPR017871

InterPro assignment

InterPro IDInterPro description
IPR003439ABC transporter-like
IPR003593AAA+ ATPase domain
IPR011527ABC transporter type 1, transmembrane domain
IPR017871ABC transporter, conserved site
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR036640ABC transporter type 1, transmembrane domain superfamily
IPR039421Type I protein exporter

Gene ontology (GO) assignment

GO categoryGO IDGO description
molecular functionGO:0005524ATP binding
cellular componentGO:0016021integral component of membrane
molecular functionGO:0016887ATPase activity
molecular functionGO:0042626ATPase-coupled transmembrane transporter activity
biological processGO:0055085transmembrane transport
SpeciesAccession
Danaus plexippusDPOGS207746
DPOGS207747
DPOGS207748
DPOGS207749
DPOGS207818
Heliconius melpomeneHMEL011973g1.t1
Manduca sextaXP_030032787.1
Plutella xylostellag16617.t1
Spodoptera frugiperda (corn)GSSPFG00029215001.5-PA
Spodoptera frugiperda (rice)SFRICE021307-PA
Acyrthosiphon pisumXP_001947434.2
XP_008178172.1
XP_016656026.1
Aedes aegypti -
Anopheles gambiae -
Apis mellifera -
Drosophila melanogasterFBpp0086666
Tribolium castaneumXP_008191266.1
XP_015833809.1
Homo sapiensNP_000918.2
NP_001335873.1
NP_001335875.1
Mus musculusNP_035206.2
XP_006503619.1

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO09033:

Expression data of alternative splicing isoform(s) of KWMTBOMO09033:

MSTRG.6301.1 (position: Chr15:10090718..10118811)

MSTRG.6301.3 (position: Chr15:10094877..10119157)

MSTRG.6301.4 (position: Chr15:10094898..10119157)

MSTRG.6301.5 (position: Chr15:10094898..10119157)

MSTRG.6301.6 (position: Chr15:10096689..10118784)

MSTRG.6301.7 (position: Chr15:10096697..10118792)

MSTRG.6301.8 (position: Chr15:10096728..10118767)

MSTRG.6301.9 (position: Chr15:10117731..10119157)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO09033:

Expression data of alternative splicing isoform(s) of KWMTBOMO09033:

MSTRG.6301.1 (position: Chr15:10090718..10118811)

MSTRG.6301.3 (position: Chr15:10094877..10119157)

MSTRG.6301.4 (position: Chr15:10094898..10119157)

MSTRG.6301.5 (position: Chr15:10094898..10119157)

MSTRG.6301.6 (position: Chr15:10096689..10118784)

MSTRG.6301.7 (position: Chr15:10096697..10118792)

MSTRG.6301.8 (position: Chr15:10096728..10118767)

MSTRG.6301.9 (position: Chr15:10117731..10119157)