KWMTBOMO14663

Position

ChromosomeChr24
Start12208762
End12227158
Strand+

view in Gbrowse: Chr24:12208762..12227158

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
NP_001040435.1glutathione S-transferase omega 39e-180502

ORF sequence (723 bp)

ATGACTTATTTTCACTCCGTAAACGCCGGTGTGATTCCGCCACCGGCTCTGACGGACAAGCTTCGTCTGTACCATGTCGACATGAACCCGTACGGTCACAGGGTGCTCCTCGTCCTCGAAGCCAAGAGGATCAAGTATGAGGTCTACAGGCTCGACCCGCTGAGGCTGCCGGAGTGGTTCCGTGCGAAGAACCCCAGATTGAAGATTCCGGTGCTGGAGATTCCTACGGACCAGGGGGACAGGTTCCTCTTCGAAAGCGTCGTGATCTGCGATTACCTGGATGAGAAGTACACGAGGCACACGCTCCACTCCCACGACCCTTACGTCAAGGCCCAGGACCGGTTGCTGATCGAAAGATTCAACGAGCTCATAAAAGGCAGCCTAGAATGCTTCGACACGAACTTCGCTTTCGGAAGTGAGCAGATCATCCAGACGCTGGAGATCTTCGAGAAGGAATTGACTAACAGAGGTACAAATTACTTCGGCGGTAACCGGCCTGGAATGCTGGACTACATGGTCTGGCCTTGGGTCGAGAGGCTGTACCTCCTGAGGTGTGTCAACGATAGAAAATTCGTGGAGAAGAAATCGCTTTTCCCTAATTTCGCGGACTGGGGTGATCAAATGCAACTAGATGATATCGTTAAGAAGCACGCGCATTCGCCTCAAGAGTATTTCGATTACTACAAAAACGCTAGAGCGCATTCTATGGGCTATTATTTGTAG

Protein sequence (240 aa)

MTYFHSVNAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICDYLDEKYTRHTLHSHDPYVKAQDRLLIERFNELIKGSLECFDTNFAFGSEQIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPNFADWGDQMQLDDIVKKHAHSPQEYFDYYKNARAHSMGYYL

Corresponding sequences in KAIKObase version 1

BMgn009607

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
PANTHERPTHR43968- 72333.9e-56 -
PANTHERPTHR43968:SF6- 72333.9e-56 -
Gene3D3.40.30.10- 132292.3e-85 -
ProSiteProfilesPS50404Soluble glutathione S-transferase N-terminal domain profile. 1910120.565 IPR004045
SUPERFAMILYSSF52833- 201235.5e-24 IPR036249
PfamPF13417Glutathione S-transferase, N-terminal domain 23988.4e-18 IPR004045
SUPERFAMILYSSF47616- 952324.6e-20 IPR036282
Gene3D1.20.1050.10- 1062222.3e-85 -
ProSiteProfilesPS50405Soluble glutathione S-transferase C-terminal domain profile. 10622710.117 IPR010987
PfamPF13410Glutathione S-transferase, C-terminal domain 1402047.9e-08 -

InterPro assignment

InterPro IDInterPro description
IPR004045Glutathione S-transferase, N-terminal
IPR010987Glutathione S-transferase, C-terminal-like
IPR036249Thioredoxin-like superfamily
IPR036282Glutathione S-transferase, C-terminal domain superfamily

Gene ontology (GO) assignment

GO categoryGO IDGO description
molecular functionGO:0005515protein binding
SpeciesAccession
Danaus plexippusDPOGS215101
Heliconius melpomeneHmelGSTo3.mrna
Manduca sextaXP_030034734.1
Plutella xylostellag26115.t1
Spodoptera frugiperda (corn)GSSPFG00010021001.5-PA
Spodoptera frugiperda (rice)SFRICE009488-PA
SFRICE028596.2-PA
Acyrthosiphon pisum -
Aedes aegypti -
Anopheles gambiae -
Apis mellifera -
Drosophila melanogaster -
Tribolium castaneum -
Homo sapiens -
Mus musculus -

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO14663:

Expression data of alternative splicing isoform(s) of KWMTBOMO14663:

MSTRG.14024.1 (position: Chr24:12192197..12228171)

MSTRG.14024.2 (position: Chr24:12208290..12228346)

MSTRG.14024.3 (position: Chr24:12208290..12228171)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO14663:

Expression data of alternative splicing isoform(s) of KWMTBOMO14663:

MSTRG.14024.1 (position: Chr24:12192197..12228171)

MSTRG.14024.2 (position: Chr24:12208290..12228346)

MSTRG.14024.3 (position: Chr24:12208290..12228171)