KWMTBOMO11260

Position

ChromosomeChr19
Start2085920
End2089041
Strand+

view in Gbrowse: Chr19:2085920..2089041

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
XP_028029361.1glutathione S-transferase 2-like6e-145411

ORF sequence (690 bp)

ATGATGACTCGCAGCATCAAATTCACAGCTTCACAAGTAAATTCGGCGAAGAAACCTCCCATACTCTACGGAGATGAAGTATCTCCGCCCGTGAGATTTGTGATGATGACAGCAGCGCACCTCAACATTCAGTTGGATTTCCACCCAATTGATCTCTTTAAGTCTGAACACAAAATGGACGCTTTTAATCAGATTAATCCACTTCAAAAGGTGCCAGTGTTGAAAGTTGATAAAGATGTGATCTGTGACAGTCACGCTATTGCAATGTACCTTTGTGAAACTACTAAATCTGAAGATTTGTATCCAGGAAGTGCTTTGGCCAGGGCAAAAATAAATCAAATGCTTTTCTACAATGCGACAACTTTATTTCCAATTGACAGTTTCATACTTTCTGAATATTTTTGTGGAAAAATGCCATCTGGAGTTAAAGTTGATGAATGGTTTAATTCTCTGCATTACCTAAATACAGCTCTGTCGGTTTCTCCATGGCTCGCTGGAGATCAGATGAGGATTTGCGACTTTTGCTGTGCTTCCACCATTAGTTCCATGGAGACGGTCGTTAATGGAATCAAGAAATTTGTTTACTTGAAGAGGTGGATGGATGAATTGGAAAAACTACCTTGTTTTGAAATCAACAGACGTGGCTTAGAGCGATTGAAATATTTTATGAGTCTTTACAAGCCAAACTAA

Protein sequence (229 aa)

MMTRSIKFTASQVNSAKKPPILYGDEVSPPVRFVMMTAAHLNIQLDFHPIDLFKSEHKMDAFNQINPLQKVPVLKVDKDVICDSHAIAMYLCETTKSEDLYPGSALARAKINQMLFYNATTLFPIDSFILSEYFCGKMPSGVKVDEWFNSLHYLNTALSVSPWLAGDQMRICDFCCASTISSMETVVNGIKKFVYLKRWMDELEKLPCFEINRRGLERLKYFMSLYKPN

Corresponding sequences in KAIKObase version 1

BMgn016556

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
Gene3D3.40.30.10- 2965.5e-21 -
SUPERFAMILYSSF52833- 161023.7e-22 IPR036249
ProSiteProfilesPS50404Soluble glutathione S-transferase N-terminal domain profile. 189919.723 IPR004045
PANTHERPTHR43969- 202233.1e-46 -
PfamPF13417Glutathione S-transferase, N-terminal domain 22943.8e-13 IPR004045
SUPERFAMILYSSF47616- 902091.8e-17 IPR036282
Gene3D1.20.1050.10- 972279.6e-25 -
ProSiteProfilesPS50405Soluble glutathione S-transferase C-terminal domain profile. 10422211.076 IPR010987

InterPro assignment

InterPro IDInterPro description
IPR004045Glutathione S-transferase, N-terminal
IPR010987Glutathione S-transferase, C-terminal-like
IPR036249Thioredoxin-like superfamily
IPR036282Glutathione S-transferase, C-terminal domain superfamily

Gene ontology (GO) assignment

GO categoryGO IDGO description
molecular functionGO:0005515protein binding
SpeciesAccession
Danaus plexippus -
Heliconius melpomeneHmelGSTe7.mrna
Manduca sextaXP_030030115.1
XP_030030117.1
Plutella xylostellag34692.t1
Spodoptera frugiperda (corn)GSSPFG00007960001.5-PA
Spodoptera frugiperda (rice)SFRICE003483.2-PA
Acyrthosiphon pisum -
Aedes aegypti -
Anopheles gambiae -
Apis mellifera -
Drosophila melanogaster -
Tribolium castaneum -
Homo sapiens -
Mus musculus -

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO11260:

Expression data of alternative splicing isoform(s) of KWMTBOMO11260:

MSTRG.9135.1 (position: Chr19:2066553..2089179)

MSTRG.9135.2 (position: Chr19:2066560..2089179)

MSTRG.9135.3 (position: Chr19:2068934..2089187)

MSTRG.9135.4 (position: Chr19:2068936..2089187)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO11260:

Expression data of alternative splicing isoform(s) of KWMTBOMO11260:

MSTRG.9135.1 (position: Chr19:2066553..2089179)

MSTRG.9135.2 (position: Chr19:2066560..2089179)

MSTRG.9135.3 (position: Chr19:2068934..2089187)

MSTRG.9135.4 (position: Chr19:2068936..2089187)