Position
| Chromosome | Chr6 |
| Start | 9711490 |
| End | 9716244 |
| Strand | + |
view in Gbrowse: Chr6:9711490..9716244
Most similar sequence in NCBI nr database
| Accession | Description | E-value | Score |
|---|---|---|---|
| 4E8E_A | Chain A, Structural Characterization Of Bombyx Mori Glutathione Transferase Bmgstd1 4E8E_B Chain B, Structural Characterization Of Bombyx Mori Glutathione Transferase Bmgstd1 4E8E_C Chain C, Structural Characterization Of Bombyx Mori Glutathione Transferase Bmgstd1 4E8E_D Chain D, Structural Characterization Of Bombyx Mori Glutathione Transferase Bmgstd1 4E8H_A Chain A, Structural Of Bombyx Mori Glutathione Transferase Bmgstd1 Complex With Gtt 4E8H_B Chain B, Structural Of Bombyx Mori Glutathione Transferase Bmgstd1 Complex With Gtt 4E8H_C Chain C, Structural Of Bombyx Mori Glutathione Transferase Bmgstd1 Complex With Gtt 4E8H_D Chain D, Structural Of Bombyx Mori Glutathione Transferase Bmgstd1 Complex With Gtt | 1e-161 | 454 |
ORF sequence (657 bp)
ATGCCCGTGCAGCCGATAAAGCTGTACTACTTGCCTCCGTCACCGCCTTGTCGTGCTGTTATGATGACGGCCAGAGTATTGGAATTAGACCTGCACCTTATCACCACTAATATCATGAACGGGGAGCACATGACACCGGAATACCTCAAGATGAATCCTCAGCACACAATCCCGACTATGGATGACAACGGATTCATTCTTTGGGAAAGTCGGGCTATTCAAACCTATCTGGTCAATGCATACGGCAAAGACGATTCTCTTTATCCCAAGAATCCTCGCCAACGTGCCATTATCGACCAGCGGTTGAATTTTGATCTTGGCACTTTGTACCTGAGATATCTTAATTTATACACACCTATCCTGTTTCGAGGGGAAGCTTACGATCAGGAGAAAGCCGACAAATTCGACGAAGCACTAGGTTGGTTGAACACGTTCCTGGACGGTCGTCCCTTCGTAGCCGGAGAAAACATGACTGTGGCGGATATCACTATTGTTGTTACAATCACTAATATCGATGCATTTGGTTACGACTTCAGCAGCCACGAAAATATTGCCAAATGGTTCGAGAGAACAAAGAAAATGCTGGAGCCCTACGGCTATGACGAAATCGACGTGACCGGAGCAAAAATGCTGGCTTCTTTCTTGAAGAAGGAATAA
Protein sequence (218 aa)
MPVQPIKLYYLPPSPPCRAVMMTARVLELDLHLITTNIMNGEHMTPEYLKMNPQHTIPTMDDNGFILWESRAIQTYLVNAYGKDDSLYPKNPRQRAIIDQRLNFDLGTLYLRYLNLYTPILFRGEAYDQEKADKFDEALGWLNTFLDGRPFVAGENMTVADITIVVTITNIDAFGYDFSSHENIAKWFERTKKMLEPYGYDEIDVTGAKMLASFLKKE
Corresponding sequences in KAIKObase version 1
BMgn006537Domains and motifs
| Database | ID | Description | Start | End | Evalue | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3.40.30.10 | - | 1 | 82 | 1.3e-28 | - |
| SUPERFAMILY | SSF52833 | - | 3 | 90 | 1.7e-25 | IPR036249 |
| ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 4 | 85 | 18.858 | IPR004045 |
| PANTHER | PTHR43969 | - | 5 | 216 | 5.7e-80 | - |
| PANTHER | PTHR43969:SF2 | - | 5 | 216 | 5.7e-80 | - |
| CDD | cd03045 | GST_N_Delta_Epsilon | 6 | 79 | 3.1e-45 | - |
| Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 8 | 82 | 3.7e-13 | IPR004045 |
| Gene3D | 1.20.1050.10 | - | 83 | 218 | 8.3e-53 | - |
| SUPERFAMILY | SSF47616 | - | 83 | 193 | 3.3e-28 | IPR036282 |
| ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 91 | 218 | 17.833 | IPR010987 |
| CDD | cd03177 | GST_C_Delta_Epsilon | 93 | 212 | 2.2e-49 | - |
| Pfam | PF13410 | Glutathione S-transferase, C-terminal domain | 133 | 190 | 5.6e-07 | - |
InterPro assignment
| InterPro ID | InterPro description |
|---|---|
| IPR004045 | Glutathione S-transferase, N-terminal |
| IPR010987 | Glutathione S-transferase, C-terminal-like |
| IPR036249 | Thioredoxin-like superfamily |
| IPR036282 | Glutathione S-transferase, C-terminal domain superfamily |
Gene ontology (GO) assignment
| GO category | GO ID | GO description |
|---|---|---|
| molecular function | GO:0005515 | protein binding |
| Species | Accession |
|---|---|
| Danaus plexippus | DPOGS202622 |
| Heliconius melpomene | HmelGSTd1.mrna |
| Manduca sexta | XP_030025645.1 XP_030025655.1 XP_030025661.1 XP_030025670.1 |
| Plutella xylostella | g25275.t1 |
| Spodoptera frugiperda (corn) | GSSPFG00013963001.6-PA |
| Spodoptera frugiperda (rice) | SFRICE005869.2-PA |
| Acyrthosiphon pisum | - |
| Aedes aegypti | AAEL001090-PA |
| Anopheles gambiae | - |
| Apis mellifera | - |
| Drosophila melanogaster | FBpp0082048 FBpp0113057 |
| Tribolium castaneum | - |
| Homo sapiens | - |
| Mus musculus | - |
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO03501:
Expression data of alternative splicing isoform(s) of KWMTBOMO03501:
MSTRG.19606.1 (position: Chr6:9705578..9716290)
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO03501:
Expression data of alternative splicing isoform(s) of KWMTBOMO03501:
MSTRG.19606.1 (position: Chr6:9705578..9716290)