KWMTBOMO08464

Position

Chromosome	Chr14
Start	9685578
End	9698666
Strand	-

view in Gbrowse: Chr14:9685578..9698666

Most similar sequence in NCBI nr database

Accession	Description	E-value	Score
P21828.1	Fibroin light chain	0.0	530

ORF sequence (789 bp)

ATGAAGCCTATATTTTTGGTATTACTCGTCGCTACAAGCGCCTACGCTGCACCATCGGTGACCATCAATCAATACAGTGATAATGAAATTCCACGCGACATTGATGATGGAAAAGCTAGTTCCGTAATCTCACGTGCATGGGACTACGTCGATGACACTGACAAAAGCATCGCCATCCTCAACGTTCAAGAGATCTTGAAGGACATGGCCAGCCAGGGCGATTATGCAAGTCAAGCATCAGCGGTGGCCCAAACCGCCGGAATTATCGCCCATCTATCTGCCGGTATCCCCGGTGATGCCTGTGCAGCCGCTAACGTCATTAACTCTTACACAGACGGCGTCAGGTCCGGAAACTTCGCCGGCTTCAGACAATCTCTCGGTCCCTTCTTCGGACACGTGGGACAAAACTTGAATCTTATCAATCAACTCGTCATCAACCCTGGTCAACTCCGATACTCTGTCGGACCAGCCCTGGGTTGTGCCGGAGGTGGAAGAATCTATGACTTCGAAGCCGCTTGGGATGCAATCTTAGCCAGCAGTGACTCTAGTTTCTTAAATGAAGAGTACTGCATCGTCAAGAGATTGTACAACTCTCGCAACAGCCAAAGCAACAACATCGCTGCCTACATCACCGCTCACTTACTTCCCCCGGTTGCTCAAGTGTTCCACCAATCAGCTGGATCAATCACAGACCTCCTGAGAGGCGTTGGCAACGGTAATGACGCGACCGGTTTAGTTGCTAATGCTCAAAGATATATTGCACAAGCAGCCAGCCAGGTTCACGTCTAA

Protein sequence (262 aa)

MKPIFLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASQASAVAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFFGHVGQNLNLINQLVINPGQLRYSVGPALGCAGGGRIYDFEAAWDAILASSDSSFLNEEYCIVKRLYNSRNSQSNNIAAYITAHLLPPVAQVFHQSAGSITDLLRGVGNGNDATGLVANAQRYIAQAASQVHV

Corresponding sequences in KAIKObase version 1

BMgn009393

Domains and motifs

Database	ID	Description	Start	End	Evalue	InterPro ID
PIRSF	PIRSF005765	-	1	262	0.0	IPR008660
Pfam	PF05849	Fibroin light chain (L-fibroin)	18	256	0.0	IPR008660

InterPro assignment

InterPro ID	InterPro description
IPR008660	Fibroin light chain

Gene ontology (GO) assignment

GO category	GO ID	GO description
cellular component	GO:0005576	extracellular region

Species	Accession
Danaus plexippus	DPOGS205997
Heliconius melpomene	HMEL005150g1.t1
Manduca sexta	XP_030030801.1
Plutella xylostella	g26550.t1
Spodoptera frugiperda (corn)	-
Spodoptera frugiperda (rice)	-
Acyrthosiphon pisum	-
Aedes aegypti	-
Anopheles gambiae	-
Apis mellifera	-
Drosophila melanogaster	-
Tribolium castaneum	-
Homo sapiens	-
Mus musculus	-

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO08464:

Expression data of alternative splicing isoform(s) of KWMTBOMO08464:

MSTRG.5511.1 (position: Chr14:9685578..9698934)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log₁₀ conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO08464:

Expression data of alternative splicing isoform(s) of KWMTBOMO08464:

MSTRG.5511.1 (position: Chr14:9685578..9698934)