KWMTBOMO08464

Position

ChromosomeChr14
Start9685578
End9698666
Strand-

view in Gbrowse: Chr14:9685578..9698666

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
P21828.1Fibroin light chain0.0530

ORF sequence (789 bp)

ATGAAGCCTATATTTTTGGTATTACTCGTCGCTACAAGCGCCTACGCTGCACCATCGGTGACCATCAATCAATACAGTGATAATGAAATTCCACGCGACATTGATGATGGAAAAGCTAGTTCCGTAATCTCACGTGCATGGGACTACGTCGATGACACTGACAAAAGCATCGCCATCCTCAACGTTCAAGAGATCTTGAAGGACATGGCCAGCCAGGGCGATTATGCAAGTCAAGCATCAGCGGTGGCCCAAACCGCCGGAATTATCGCCCATCTATCTGCCGGTATCCCCGGTGATGCCTGTGCAGCCGCTAACGTCATTAACTCTTACACAGACGGCGTCAGGTCCGGAAACTTCGCCGGCTTCAGACAATCTCTCGGTCCCTTCTTCGGACACGTGGGACAAAACTTGAATCTTATCAATCAACTCGTCATCAACCCTGGTCAACTCCGATACTCTGTCGGACCAGCCCTGGGTTGTGCCGGAGGTGGAAGAATCTATGACTTCGAAGCCGCTTGGGATGCAATCTTAGCCAGCAGTGACTCTAGTTTCTTAAATGAAGAGTACTGCATCGTCAAGAGATTGTACAACTCTCGCAACAGCCAAAGCAACAACATCGCTGCCTACATCACCGCTCACTTACTTCCCCCGGTTGCTCAAGTGTTCCACCAATCAGCTGGATCAATCACAGACCTCCTGAGAGGCGTTGGCAACGGTAATGACGCGACCGGTTTAGTTGCTAATGCTCAAAGATATATTGCACAAGCAGCCAGCCAGGTTCACGTCTAA

Protein sequence (262 aa)

MKPIFLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASQASAVAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFFGHVGQNLNLINQLVINPGQLRYSVGPALGCAGGGRIYDFEAAWDAILASSDSSFLNEEYCIVKRLYNSRNSQSNNIAAYITAHLLPPVAQVFHQSAGSITDLLRGVGNGNDATGLVANAQRYIAQAASQVHV

Corresponding sequences in KAIKObase version 1

BMgn009393

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
PIRSFPIRSF005765- 12620.0 IPR008660
PfamPF05849Fibroin light chain (L-fibroin) 182560.0 IPR008660

InterPro assignment

InterPro IDInterPro description
IPR008660Fibroin light chain

Gene ontology (GO) assignment

GO categoryGO IDGO description
cellular componentGO:0005576extracellular region
SpeciesAccession
Danaus plexippusDPOGS205997
Heliconius melpomeneHMEL005150g1.t1
Manduca sextaXP_030030801.1
Plutella xylostellag26550.t1
Spodoptera frugiperda (corn) -
Spodoptera frugiperda (rice) -
Acyrthosiphon pisum -
Aedes aegypti -
Anopheles gambiae -
Apis mellifera -
Drosophila melanogaster -
Tribolium castaneum -
Homo sapiens -
Mus musculus -

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO08464:

Expression data of alternative splicing isoform(s) of KWMTBOMO08464:

MSTRG.5511.1 (position: Chr14:9685578..9698934)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO08464:

Expression data of alternative splicing isoform(s) of KWMTBOMO08464:

MSTRG.5511.1 (position: Chr14:9685578..9698934)