KWMTBOMO05957

Position

ChromosomeChr10
Start15485974
End15488880
Strand-

view in Gbrowse: Chr10:15485974..15488880

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
XP_004921608.1esterase FE40.01098

ORF sequence (1602 bp)

ATGCTGCGATTGGTTGCTCTTTTGGGCTTGTTGTCGGCGGTGGCTGCCCGGTTGAGGATAGACCCGCTTGTTGATACTCAGCGGGGCCTCATCAGGGGACTGAGGTCCGAAAATGGAAAGTTCTCGAAGTTTTTGGGCATACCGTACGCACTAGTCGACGAGGACAATCCTTTCGGGCCATCAGTACCACACCCTGGTTTCGAAGAGACATTCGAAGCGTACGATGATTCCGTAGTTTGTCCTCAAGTTACTAATAACGTCGGAGTTGGTAGTCTCCAGTGTTTGAACCTGAACGTTTATGTCTCAAACACGGCTACATCGCGCAACAAGCGCCCCGTGATGGTTTGGATCCACGGAGGAGGATACACTAGCGGCAGCGGGACAGAGCGGGACTACTCCTTCGACGACCTGGTCCGACATGACGTCATCGTCGTATCGGTCAGCTACCGACTCGGACTCTATGGGTTCTTATGTTTGGACAGTCCTGATTTTCCCGGCAACCAGGGTATGAAGGATCAAGTTCTTGCTTTGAGATGGATTAAGGAAAATATCGAAGCGTTCGGCGGAGATGCCTCTAAAATAACCTTATTTGGAGAAAGTGCTGGCGGCGCCGCTGTCGAGCTACACCTACTGACCGACCAGGATAAGCTGTTCAATCAGGTGATCATTCAGAGTGGATCTGCTTTCTTTCCTGGGGGTATTGGGCAACCTAGAAACCGTGTTCCAATAGAAATAGCAAGCCAGCTGGGATTCAAAACTGACAACTTCTTAGAGGCGGTAAAGTTTCTGGCCGATCAAGACCCCCACCTGGTGGTTGCAGCCAGCACTTCTCAAAGCTCTACCTTAAGAGGCGGTACACTCAAACCTTGCAGAGAAAACAAATACGACGGAGTTGACAGTTTTCTTTCCGACTTTCCTGAAAATTTAGAGGCTAGAAACATTCCTGCTATTTATGGAGTAACCAATAAAGAATTTCTAACATTACATGCTTATGTGACCCCAGAAGACTACGAGGTGACAGGAATTCGAACTTTTCTGGAACGGGCTTTCAACTTGACTGATAACGAGATGAAAGACCACGTGAGACATTTCTACATCGGAGACGAGACGCTGACCGAGGAGTTTTTCGATGAGTTTATAGATTTTGCGTCGGACTATTACTTCAACTACGCCGTCCAACGGTCTATAAAGAAGTCATTGGCCGACGGTAACAAGGAGGTATATTACTACGTGTTCTCGTACGACGGAGGCAGGAATGCCATGAAGGAGTACCTCGGCATAACGGCGGAGGGCGCTGCGCACGCGGACGAGCTCGGCTACCTGCTGGCCGTGGATGCGGTCCCGGGACAACACATCGCCGAGGAGGACCAACTGATCATCGATAGGATCACTACTCTTTGGGCTAATTTTGCTAAATACGGCAACCCCACCCCTGAGCCGACGGACCTGCTGCCGGTCGTGTGGTCGACAGTAGAAGGTAACAAGCGGCCGTATCTGGACATCGATACCGACCTGCAGCTCAGAAGCAGGCCCTTCCACTACCGGATGGCCTTCTGGGATCTCTTGTATAAGCTCTATGGAGAATTGGAGCGCAAGAACTAA

Protein sequence (533 aa)

MLRLVALLGLLSAVAARLRIDPLVDTQRGLIRGLRSENGKFSKFLGIPYALVDEDNPFGPSVPHPGFEETFEAYDDSVVCPQVTNNVGVGSLQCLNLNVYVSNTATSRNKRPVMVWIHGGGYTSGSGTERDYSFDDLVRHDVIVVSVSYRLGLYGFLCLDSPDFPGNQGMKDQVLALRWIKENIEAFGGDASKITLFGESAGGAAVELHLLTDQDKLFNQVIIQSGSAFFPGGIGQPRNRVPIEIASQLGFKTDNFLEAVKFLADQDPHLVVAASTSQSSTLRGGTLKPCRENKYDGVDSFLSDFPENLEARNIPAIYGVTNKEFLTLHAYVTPEDYEVTGIRTFLERAFNLTDNEMKDHVRHFYIGDETLTEEFFDEFIDFASDYYFNYAVQRSIKKSLADGNKEVYYYVFSYDGGRNAMKEYLGITAEGAAHADELGYLLAVDAVPGQHIAEEDQLIIDRITTLWANFAKYGNPTPEPTDLLPVVWSTVEGNKRPYLDIDTDLQLRSRPFHYRMAFWDLLYKLYGELERKN

Corresponding sequences in KAIKObase version 1

BMgn002902

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
Gene3D3.40.50.1820- 45281.6e-121 IPR029058
PfamPF00135Carboxylesterase family 215192.8e-105 IPR002018
SUPERFAMILYSSF53474- 225238.1e-102 IPR029058
PANTHERPTHR43142- 245251.6e-104 -
ProSitePatternsPS00122Carboxylesterases type-B serine active site. 187202- IPR019826

InterPro assignment

InterPro IDInterPro description
IPR002018Carboxylesterase, type B
IPR019826Carboxylesterase type B, active site
IPR029058Alpha/Beta hydrolase fold

Gene ontology (GO) assignment

No GO ID

SpeciesAccession
Danaus plexippus -
Heliconius melpomene -
Manduca sexta -
Plutella xylostellag24473.t1
g24473.t2
Spodoptera frugiperda (corn)GSSPFG00015570001.4-PA
GSSPFG00018753001.5-PA
GSSPFG00018755001.3-PA
GSSPFG00021469001.2-PA
GSSPFG00026508001-PA
GSSPFG00030080001.3-PA
GSSPFG00035206001.3-PA
GSSPFG00035344001.4-PA
Spodoptera frugiperda (rice)SFRICE030049-PA
Acyrthosiphon pisum -
Aedes aegypti -
Anopheles gambiae -
Apis mellifera -
Drosophila melanogaster -
Tribolium castaneum -
Homo sapiens -
Mus musculus -

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO05957:

Expression data of alternative splicing isoform(s) of KWMTBOMO05957:

MSTRG.2135.1 (position: Chr10:15485974..15512638)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO05957:

Expression data of alternative splicing isoform(s) of KWMTBOMO05957:

MSTRG.2135.1 (position: Chr10:15485974..15512638)