Position
| Chromosome | Chr27 |
| Start | 8986175 |
| End | 9002642 |
| Strand | + |
view in Gbrowse: Chr27:8986175..9002642
Most similar sequence in NCBI nr database
| Accession | Description | E-value | Score |
|---|---|---|---|
| XP_004926984.1 | ATP-binding cassette sub-family D member 2 | 0.0 | 1570 |
ORF sequence (2265 bp)
ATGCCGGCCATTTTGTCGAAAATTCGCGAACAAGCAACGCGGGTGCAACCCTCGCTCGCACTCGGCGTGGGCGTAGGGGTGGCGCTAGCCGCGTGCGCCGTTTATTCAACAAGAGACAAGAAACAAGCCCCACCATGCAACAATAACAATAATTATAAGATCTTGAAGAACGGTAATATTCACACGGAAGATAATGTCAAGACGAACGAAACTTGTGGGGGGAGGTGCGGGGCGGAGCAGTGCGCCCTCTGCAGGGGGGAAGTCGACACCGACAACAAACAGAATATCGAAGACGCCGACGAAACCCAATCAATCGAGGAGCACGTCCCGGGTCTCAACCTCGAATTCCTCAGGCAGCTGATCTCACTCGCGAGGATCATGGTCCCAGGGTTCAGGAGCCACGAAGTAGCTCTACTTACAGCTCATACTCTATGCTTATTTTCGAGGACCTTTCTATCGATCTACGTCGCTTCCTTGGAAGGGTCCATTGTGAAGCACATAGTCCAAAAAGACATGCGCAGTTTCTCGTCGTTGCTGATGCAGTGGTTCGGCATTGCCATACCGGCTACCTTCATCAACTCCATGATCAGATACCTCGAGAGTCGATTGGCCCTGGCCTTCAGAACCAGACTGGTCAATCACGCTTACGAGCTGTACTTTAAAAACCAGACCTACTATAGGGTCGCTAACTTGGACGCTAGGATCGAAAACGCTGATCACAGGTTGACGGAAGATGTCTCCGTGTTCACGCAGTCCGTGGCGCATCTCTACAGTTCGCTCACAAAACCTTGCTTCGACTTGCTGCTGATTGTCCTCACTCTGGCTTCGTACTCCAACAAGATGAAAGGAAACATATTCATTGGTCCCGGGATAGCAACGGTGGTGATATGCGCGACCGGACAAGTCCTTCGTATGCTCAGTCCGAGGTTCGGTGCTTTGGCCGGGGAGGAGGCGAGGATGCGCGCTAACCTGCGCCATGTCCACGCCAGTCTCATCGCGCACGCTGAAGAAGTCGCCTTCTACGGAGGGCATAAGGTGGAACTAGGACAGCTGCAGTCCGCGTACAAACAGCTGGTCGCGCAAATGACTTCGGTGTTCAACAAGAAACTGTGGTACGTGATGCTGGAGCAATTCTGCATGAAGTATCTGTGGTCCGGCACCGGAATGGTCATGCTGGCGCTGCCCATACTCACGGGGACTAAGGAAGGAGGTGAAAGCAACAGCATCAGCGCGAGAACAGAATACATGACCACGTCCAGGAACCTGCTGAATTCGGCTGCGGACGCCATCGAGAGGCTCATGTCCAGTTATAAGGAGGTGGTGACGCTGGCGGGGTACGCCACGCGCGTGTCCGACATGCTGCTGGTGTTCGGCGAGGTGGCGCGCGGCCGCTGCGTGCGCGCCGTGCACGTGGCGCCGCCGCACCAAGCCTTCCAGGTCACCTTCCGGGACAACCAGCCCGTGCCGCAAGGCAAAGTAATGTACACGGACGACTTGTCGATAAAGCTTCGCAACGTGCCGATAGTGACCCCGGCCTGCGACGTGGTGGCCGCCGGCGTGACCCTGGACATCGCGCCGGGGACGCACCTCCTCATCGTTGGACCCAACGGATGTGGGAAGTCCAGCTTATTCCGAATAATCTCCGGTCTGTGGCCGGTGTTCGGCGGCGAGCTGTCGGTGCCGCGGCCCTGCGCGTGCGGCCACTGCGCCGACGAGACCAACACCAGCGACGCCTGCGCCTCGCGCCCCATCATGTTCTACATACCGCAAAGACCGTACATGTCGGCGGGCTCGCTGCTGGACCAGGTGACGTACCCGTCGCGCGCGGCGCCGGACGACGCGGCGGCGGAGGAGCGCGCGCGGCGCATCCTGCGCGCGGTGCGGCTGCACGCGGCGGCGGCGCGGCTGGGCGGGCTGCGGGCCGTGCGCGACTGGCGCGCCACGCTCTCCGGCGGCGAGAAGCAGCGCCTCGCCATGGCCAGGATGTTCTACCACAGGCCGGTGTACGCTCTGCTGGACGAGTGCACGAGTGCCGTTTCCATGGAGACGGAGGTCGTCATGTATGAGGAGGCTGTCAAGGAGGGCATCACGCTACTCTCAATCACGCACCGACCGAGCGTGTGGAAGTACCACACGCACGTTTTGGAGTTCGACGGCGCCGGCAACTGGTCGTTCCGGAAGCTGGACAAGGAGAGCGCGGTCTCCAGCCCCGCCATCAACAGCGCCGCGACCAGCACGCCAGCGGAGCCCCCCGCCGAACACTAG
Protein sequence (754 aa)
MPAILSKIREQATRVQPSLALGVGVGVALAACAVYSTRDKKQAPPCNNNNNYKILKNGNIHTEDNVKTNETCGGRCGAEQCALCRGEVDTDNKQNIEDADETQSIEEHVPGLNLEFLRQLISLARIMVPGFRSHEVALLTAHTLCLFSRTFLSIYVASLEGSIVKHIVQKDMRSFSSLLMQWFGIAIPATFINSMIRYLESRLALAFRTRLVNHAYELYFKNQTYYRVANLDARIENADHRLTEDVSVFTQSVAHLYSSLTKPCFDLLLIVLTLASYSNKMKGNIFIGPGIATVVICATGQVLRMLSPRFGALAGEEARMRANLRHVHASLIAHAEEVAFYGGHKVELGQLQSAYKQLVAQMTSVFNKKLWYVMLEQFCMKYLWSGTGMVMLALPILTGTKEGGESNSISARTEYMTTSRNLLNSAADAIERLMSSYKEVVTLAGYATRVSDMLLVFGEVARGRCVRAVHVAPPHQAFQVTFRDNQPVPQGKVMYTDDLSIKLRNVPIVTPACDVVAAGVTLDIAPGTHLLIVGPNGCGKSSLFRIISGLWPVFGGELSVPRPCACGHCADETNTSDACASRPIMFYIPQRPYMSAGSLLDQVTYPSRAAPDDAAAEERARRILRAVRLHAAAARLGGLRAVRDWRATLSGGEKQRLAMARMFYHRPVYALLDECTSAVSMETEVVMYEEAVKEGITLLSITHRPSVWKYHTHVLEFDGAGNWSFRKLDKESAVSSPAINSAATSTPAEPPAEH
Corresponding sequences in KAIKObase version 1
BMgn004616Domains and motifs
| Database | ID | Description | Start | End | Evalue | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 32 | 5.0 | - |
| PANTHER | PTHR11384 | - | 52 | 736 | 0.0 | - |
| PANTHER | PTHR11384:SF13 | - | 52 | 736 | 0.0 | - |
| Pfam | PF06472 | ABC transporter transmembrane region 2 | 123 | 397 | 3.9e-90 | IPR011527 |
| SUPERFAMILY | SSF90123 | - | 137 | 386 | 9.9e-10 | IPR036640 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 143 | 442 | 10.619 | IPR011527 |
| Gene3D | 3.40.50.300 | - | 483 | 732 | 8.9e-42 | - |
| SUPERFAMILY | SSF52540 | - | 494 | 719 | 1.5e-35 | IPR027417 |
| CDD | cd03223 | ABCD_peroxisomal_ALDP | 501 | 723 | 3.9e-72 | - |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 501 | 744 | 15.08 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 519 | 677 | 2.3e-18 | IPR003439 |
| SMART | SM00382 | - | 526 | 729 | 3.8e-06 | IPR003593 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 649 | 663 | - | IPR017871 |
InterPro assignment
| InterPro ID | InterPro description |
|---|---|
| IPR003439 | ABC transporter-like |
| IPR003593 | AAA+ ATPase domain |
| IPR011527 | ABC transporter type 1, transmembrane domain |
| IPR017871 | ABC transporter, conserved site |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR036640 | ABC transporter type 1, transmembrane domain superfamily |
Gene ontology (GO) assignment
| GO category | GO ID | GO description |
|---|---|---|
| molecular function | GO:0005524 | ATP binding |
| cellular component | GO:0016021 | integral component of membrane |
| molecular function | GO:0016887 | ATPase activity |
| molecular function | GO:0042626 | ATPase-coupled transmembrane transporter activity |
| biological process | GO:0055085 | transmembrane transport |
| Species | Accession |
|---|---|
| Danaus plexippus | DPOGS213906 |
| Heliconius melpomene | HMEL006069g1.t1 |
| Manduca sexta | XP_030024864.1 |
| Plutella xylostella | g30313.t1 |
| Spodoptera frugiperda (corn) | GSSPFG00016359001.1-PA |
| Spodoptera frugiperda (rice) | SFRICE030072-PA |
| Acyrthosiphon pisum | XP_001943381.2 |
| Aedes aegypti | AAEL010047-PA AAEL010047-PB |
| Anopheles gambiae | AGAP002071-PA |
| Apis mellifera | XP_395153.3 |
| Drosophila melanogaster | FBpp0088213 FBpp0088214 FBpp0088215 FBpp0088216 FBpp0088217 FBpp0300567 |
| Tribolium castaneum | XP_971218.1 |
| Homo sapiens | NP_005155.1 XP_011536329.1 |
| Mus musculus | NP_001345896.1 NP_036124.2 |
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO16097:
Expression data of alternative splicing isoform(s) of KWMTBOMO16097:
MSTRG.15841.1 (position: Chr27:8956800..9005192)
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO16097:
Expression data of alternative splicing isoform(s) of KWMTBOMO16097:
MSTRG.15841.1 (position: Chr27:8956800..9005192)