Position
| Chromosome | Chr26 |
| Start | 3222654 |
| End | 3308844 |
| Strand | - |
view in Gbrowse: Chr26:3222654..3308844
Most similar sequence in NCBI nr database
| Accession | Description | E-value | Score |
|---|---|---|---|
| XP_021208144.1 | ABC transporter G family member 23 isoform X1 | 0.0 | 1635 |
ORF sequence (2376 bp)
ATGCCAGCTTACGACAATGAAGGAGCCACGATATCCATGGAGGACGTCCGGGAAATCGACCGTCCAATCACCATTAGCACCATAGAAGAAGAGCTAATAGCCAGAAGAAACAGAATGTTCAAAACTCAAAAGTCCACAGTTGCTTCTAGGAGGCAGCAAGCGGTGTGTGTCAGACGAGCGCACAAAAGATATGGAACAGCTAAAAACCCTAACGTTATTTTGGATGGTCTGAATATGACTGTTGCTAAAGGATCTATATATGGCCTTTTGGGTGCTTCTGGCTGCGGCAAGACCACACTGCTGTCGTGTATAGTCGGCAGACGAAGACTAAATTCTGGTGAGATCTGGGTGCTGGGTGGAAAGCCCGGAAGCCCTGGCAGTGGAGTCCCTGGGCCTAGAATAGGATATATGCCACAGGAAGTCGCGCTCTTCGGCGAATTTTCGATCAGAGAAACACTAATATATTTCGGTTGGATCGCGAACATGTCCACTCCACAAGTAGAAGAACGAATAGACTTCCTCATCAAGTTATTGCAGTTACCTAATCCTACAAGACAAGTCAAAAATTTATCTGGGGGACAACAAAGAAGGACTTCTTTAGCCGCTGCCCTTATTCACGATCCTGAGCTGCTTATCCTGGACGAGCCTACAGTTGGAGTGGATCCTGTGCTCAGACAAAGCATCTGGGATCATCTCGTGGATATAACAAAGGAAGGTCGGACAACAGTGATCATAACTACTCATTACATCGACGAAACAAAACAAGCTAACATGATTGGCCTTATGCGAGGCGGTAGATTTTTGGCTGAAGAGTCTCCGAGCGAGTTGATCAGCCGCTACAACGCCGAAAGCCTTGAAGAAGTGTTCCTGAAGCTGTCAGTGCTACAGAATCTAGGCAAGCGCCGAAGATCTAGCATTCTCGCTGATGTCGTTGAAAAAGTTGAGCTTCCTACTATGCCTGATCCATCAGCCATAGATTTGGAGGAAGCAGAAGTAGGAGAGATTTCCGGAGAGTTCGGTGACAACGTCTCGATGAGCAGTAAAGGAAGGGTTGTAGTGGCACCGGACCTACCAATTCCAGTAGAAGCTATACCCCCTGAAGAGAAACCGAAGAGGACAAAAATGGAAATGATCATGCCAATGAAATGGCATCACATGAAAGCTCTAATATGGAAGAACTTCTGGAGTCTATTTAGGAACTTTGGTGTATTAGCGTTCATAATGGGCTTACCGATATCGCAAATGGTCTTATTCTGCCTCGCTATCGGTCATTATCCTGTTGGTCTTCCCATAGCGGTTGTGAATTACGAGTCTCACAGCAGCGATCCGTTGTGTTATTATGACCAGAAGAAATGCCCTCAAGACCGCAGCACGTACGATTGGCATTTGACGAACTTTAGCTGCCGTTATTTGGATTTCCTATCGAAGCGGCAGAGCAATCTGATCCTGTACCCCAACACTGAAGAAGCCATGTCGGAAGCAGCCCACGGCAAAGCCAGGGTCGTTCTGGTGTTCCCTGCCAATTTCTCAACTTGTCTTCAAGAAAGAATCACGAATCCACGCCGCACAGATGACTACACTATTATGAATTCCGATGTAGAGATCCACATGGATAATACAGATAAACAAGTCGAATGGATGTTGAGTCGCGATCTGCAGCTTGCGTTCATGGACGCTACACAGGAGCTGGCGAAGATCTGTCAGCTACCCTCGAGAATGATGTCCATTCCGGTGCACTTCAATGAGCCTATCTATGGTCTAGATGAGGCCAACTTCACCGATTTTGCTGGACCGGGAGTAATATTAACTATCATATTTTTCTTGGCGGTGGCTTTGACTTCAGGGTCTATGCTGGCTGAAAGAAATGAAGGCATCCTTGAAAGGACTCTAGTTTCAGGAATCACTGGTACAGAGATTCTGTTCTCACACGTCACGGTACAAATGCTGGTGATGATAGCCCAGTCGGTCATTGTCTTGGTCATCGGCTTCGTGTTCTTTGGACTCACGATGAGAGGTCCTATTGGATGGGTCACATTCCTCACACTGATCACTGGATTGTGTGGAATGACTTTTGGTTTCGTCGTGTCCTGTGTTTGTGACACCGACAGAACAGCTACTTACCTGGCTCTTGGCTCGTTCCTGCCGATGGTGTTACTTTGCGGCATCATATGGCCCGTTGAAGGTATGCACCTGATTCTACAGTGGATCAGCTACATTCTTCCGCTTACGAAATCTACAGAGTCTCTCAGATCGATGCTACAGAGAGGTTGGACTATCAATGTACCCACTGTCTACTCTGGATTCATATCAACCGGAATTTGGATAGCTATTTATTTGACCACAAGTATTTTACTACTTAAATTTAAGAAAGGCTAA
Protein sequence (791 aa)
MPAYDNEGATISMEDVREIDRPITISTIEEELIARRNRMFKTQKSTVASRRQQAVCVRRAHKRYGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLGGKPGSPGSGVPGPRIGYMPQEVALFGEFSIRETLIYFGWIANMSTPQVEERIDFLIKLLQLPNPTRQVKNLSGGQQRRTSLAAALIHDPELLILDEPTVGVDPVLRQSIWDHLVDITKEGRTTVIITTHYIDETKQANMIGLMRGGRFLAEESPSELISRYNAESLEEVFLKLSVLQNLGKRRRSSILADVVEKVELPTMPDPSAIDLEEAEVGEISGEFGDNVSMSSKGRVVVAPDLPIPVEAIPPEEKPKRTKMEMIMPMKWHHMKALIWKNFWSLFRNFGVLAFIMGLPISQMVLFCLAIGHYPVGLPIAVVNYESHSSDPLCYYDQKKCPQDRSTYDWHLTNFSCRYLDFLSKRQSNLILYPNTEEAMSEAAHGKARVVLVFPANFSTCLQERITNPRRTDDYTIMNSDVEIHMDNTDKQVEWMLSRDLQLAFMDATQELAKICQLPSRMMSIPVHFNEPIYGLDEANFTDFAGPGVILTIIFFLAVALTSGSMLAERNEGILERTLVSGITGTEILFSHVTVQMLVMIAQSVIVLVIGFVFFGLTMRGPIGWVTFLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISYILPLTKSTESLRSMLQRGWTINVPTVYSGFISTGIWIAIYLTTSILLLKFKKG
Corresponding sequences in KAIKObase version 1
BMgn010726Domains and motifs
| Database | ID | Description | Start | End | Evalue | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | PTHR43038 | - | 28 | 791 | 0.0 | - |
| PANTHER | PTHR43038:SF5 | - | 28 | 791 | 0.0 | - |
| Gene3D | 3.40.50.300 | - | 50 | 315 | 8.8e-59 | - |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 55 | 289 | 19.415 | IPR003439 |
| SUPERFAMILY | SSF52540 | - | 57 | 281 | 1.5e-52 | IPR027417 |
| CDD | cd03230 | ABC_DR_subfamily_A | 62 | 267 | 1.7e-54 | - |
| Pfam | PF00005 | ABC transporter | 74 | 217 | 5.6e-28 | IPR003439 |
| SMART | SM00382 | - | 83 | 273 | 1.2e-08 | IPR003593 |
| Pfam | PF01061 | ABC-2 type transporter | 543 | 752 | 4.4e-35 | IPR013525 |
| ProSiteProfiles | PS51012 | ABC transporter integral membrane type-2 domain profile. | 560 | 789 | 17.531 | IPR000412 |
InterPro assignment
| InterPro ID | InterPro description |
|---|---|
| IPR000412 | ABC-2 transporter |
| IPR003439 | ABC transporter-like |
| IPR003593 | AAA+ ATPase domain |
| IPR013525 | ABC-2 type transporter |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene ontology (GO) assignment
| GO category | GO ID | GO description |
|---|---|---|
| molecular function | GO:0005524 | ATP binding |
| cellular component | GO:0016020 | membrane |
| cellular component | GO:0016021 | integral component of membrane |
| molecular function | GO:0016887 | ATPase activity |
| cellular component | GO:0043190 | ATP-binding cassette (ABC) transporter complex |
| biological process | GO:0055085 | transmembrane transport |
| Species | Accession |
|---|---|
| Danaus plexippus | DPOGS212189 |
| Heliconius melpomene | HMEL013154g1.t1 |
| Manduca sexta | XP_030025816.1 |
| Plutella xylostella | g18345.t1 |
| Spodoptera frugiperda (corn) | GSSPFG00027618001.1-PA |
| Spodoptera frugiperda (rice) | SFRICE004184-PA |
| Acyrthosiphon pisum | XP_001945213.1 |
| Aedes aegypti | AAEL005491-PC AAEL005491-PD AAEL005491-PE |
| Anopheles gambiae | AGAP002638-PA |
| Apis mellifera | XP_026301457.1 XP_026301458.1 |
| Drosophila melanogaster | FBpp0099384 FBpp0311936 |
| Tribolium castaneum | XP_967359.1 |
| Homo sapiens | - |
| Mus musculus | - |
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO15581:
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.