KWMTBOMO12909

Position

Chromosome	Chr22
Start	3968295
End	3978621
Strand	-

view in Gbrowse: Chr22:3968295..3978621

Most similar sequence in NCBI nr database

Accession	Description	E-value	Score
XP_004931997.1	ATP-binding cassette sub-family G member 5 isoform X2	0.0	1324

ORF sequence (1923 bp)

ATGATCGGTGGCGATTATACTTTGGAGCTGTGCAACGTTTTCCATTCGGGACAGGTGGAACCAGGCAGCTTCTTCCAACGTCTCACTGGAGGCGTGAAGACAGGAGTGATCCTTAAAGATGTATCCTTCACGACACACAGCGGCGAAGTCACGGCCATACTGGGATCTAAAGGTAGCGGTAAACGCGCCCTCCTAGACGTGATAGCTCGTCGCGTGCCGTCAAAAGGCCACGTGCTACTCGAAGGCGTACCCTTAGAAGAGGAACAGTTCAACATCAACTGCGCTTTGGTTCGACACTCGACAAGACTGCTGCCAGGACTGAGCGTTCAGCAGACATTGGCCTTATCACTTACTAAGATTTCAGGGTATTTGAAGTCATCGAAAGTGAAACAAGTGATGGCTGACATGGCTCTCTCGCAGGTTGCGAACAAATGCGTCACAAATTTAACCAAAAGCGAATACAGAAGACTAGTTATTGGAGTGCAATTGATTCGTGATCCCATTATATTATTACTGGATGAGCCGACATGGGATTTGGATCCTCTCAACACATATCTTGTTATCTCAATATTATCGAATGCCGCTAAAAAATACGGGACCGCTATCATACTCACAATGGAAAAGCCTAGATCAGATGTATTCCCATTCCTGGACCGGGTGGTGTATCTATGCCTCGGGGATGTAGTATACGCGGGACCAACGAGGAACTTGCTTGACTACTTCGGCAGCATCGGGTTCCCGTGTCCACAGTTAGAAAACCCGCTCATGTACTACCTGTGCCTCTCCACCGTTGATAGGAGATCACGGGAGCGCTTCATTGAATCAAACCACCAGATCGCGGCGCTGGTCGAGAAATTTAAGATCGAAGGGCAAGCCATCATGCAGGGGAACCTTCATGAAAACAATCGTATCGTAAACCCTAATAAAGTACAAATGAACTATGGGAAGCCTGGCGGATTTAAGACAGTGTGGATGTTGTACTTACGGACTCTAGCTACAATATTCAATCTTAACAAACACGGATTCAAGCAAATGTTTATGAGACTTCTTTGTTTACCGATATATTTTTTCATACTTTGGATTTTCTACAACGAGGCAAAGGATTATCAACGGGCTTTCATTACTAAAAGCGGTTTAATCTTCAACGCAATGGTCGGAACTTATTTTGTCAGCATTATGAACACGATTTGTCTTTACGGTCCTTACAGAACTCGGTACTATGAAGAGTCCCAGGAGGGACATTACAGCGGCGCCAGTTTACTTCTGTCTTGGAATATAGTTTCGTTGCCATTTTCATGTATCACTTCGTTCGCTTCGGCTGCAATTATTTACCCGATCTTGGCCGACATTTCGGAATCGTTGGACTACATTCACTTCTCGTTGGTGCTGTGGTCGTCGTATATTTACGCGGAACAACAAGCGATCGCGATCATGGTATTCGTTAAGAACGGACTGAACGCCGCCATTGTCAACTTGTACATCACTTGCATTTACGTCATGCTCGCCAGTGGAGTGTTAAGATCCTACAAAGGCTTCGAAGACTGGCTCCACTACTTAACTTACATAACGCACACACGTTACGCCTCGATCTTCCTCCACCGGACCGTCTTCAAGCAACCGACCTTCAACATTCTGCCCTACAGCGACCACGAGAATTGCACGGGCATCACCAGCCTCATTCAGACCTCGTCGAGTTTAAACACGAATTCCAACGCTAACTGCAGATACGCCAGCGGGAAGGCATTCTTGACTGAACGATTCACGTCGAAAACTTTCACGGGGGACATTAACTTAGCGGGAGACTTCAATTTAAATTTCAATCTCGGCGTGTCGTTTGCATTCTCCGTCGGTATTATGATTTTCAACAAATTCCTGTATCTGATGCCTCTGCCTAGCTACATAACCGATAAATTCAGAGAATAA

Protein sequence (640 aa)

MIGGDYTLELCNVFHSGQVEPGSFFQRLTGGVKTGVILKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRVPSKGHVLLEGVPLEEEQFNINCALVRHSTRLLPGLSVQQTLALSLTKISGYLKSSKVKQVMADMALSQVANKCVTNLTKSEYRRLVIGVQLIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVYLCLGDVVYAGPTRNLLDYFGSIGFPCPQLENPLMYYLCLSTVDRRSRERFIESNHQIAALVEKFKIEGQAIMQGNLHENNRIVNPNKVQMNYGKPGGFKTVWMLYLRTLATIFNLNKHGFKQMFMRLLCLPIYFFILWIFYNEAKDYQRAFITKSGLIFNAMVGTYFVSIMNTICLYGPYRTRYYEESQEGHYSGASLLLSWNIVSLPFSCITSFASAAIIYPILADISESLDYIHFSLVLWSSYIYAEQQAIAIMVFVKNGLNAAIVNLYITCIYVMLASGVLRSYKGFEDWLHYLTYITHTRYASIFLHRTVFKQPTFNILPYSDHENCTGITSLIQTSSSLNTNSNANCRYASGKAFLTERFTSKTFTGDINLAGDFNLNFNLGVSFAFSVGIMIFNKFLYLMPLPSYITDKFRE

Corresponding sequences in KAIKObase version 1

BMgn000472

Domains and motifs

Database	ID	Description	Start	End	Evalue	InterPro ID
ProSiteProfiles	PS50893	ATP-binding cassette, ABC transporter-type domain profile.	8	250	16.313	IPR003439
Gene3D	3.40.50.300	-	25	242	2.5e-37	-
SUPERFAMILY	SSF52540	-	32	249	2.8e-32	IPR027417
PANTHER	PTHR19241	-	34	543	1.2e-76	-
PANTHER	PTHR19241:SF487	-	34	543	1.2e-76	-
Pfam	PF00005	ABC transporter	38	176	6.8e-19	IPR003439

InterPro assignment

InterPro ID	InterPro description
IPR003439	ABC transporter-like
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene ontology (GO) assignment

GO category	GO ID	GO description
molecular function	GO:0005524	ATP binding
molecular function	GO:0016887	ATPase activity

Species	Accession
Danaus plexippus	DPOGS210042
Heliconius melpomene	-
Manduca sexta	XP_030034376.1
Plutella xylostella	g32868.t1
Spodoptera frugiperda (corn)	GSSPFG00011982001-PA
Spodoptera frugiperda (rice)	SFRICE010778-PA
Acyrthosiphon pisum	XP_001944095.2
Aedes aegypti	AAEL027424-PA
Anopheles gambiae	AGAP002051-PA
Apis mellifera	XP_001122245.1 XP_006564576.1
Drosophila melanogaster	FBpp0084089
Tribolium castaneum	XP_968555.2
Homo sapiens	NP_071881.1 XP_005264537.1 XP_006712136.1 XP_006712137.1 XP_011531326.1 XP_011531327.1 XP_011531328.1 XP_011531329.1 XP_011531330.1
Mus musculus	NP_114090.1

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO12909:

Expression data of alternative splicing isoform(s) of KWMTBOMO12909:

MSTRG.11670.2 (position: Chr22:3968364..3978330)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log₁₀ conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO12909:

Expression data of alternative splicing isoform(s) of KWMTBOMO12909:

MSTRG.11670.2 (position: Chr22:3968364..3978330)