KWMTBOMO08815

Position

ChromosomeChr15
Start5874997
End5889601
Strand-

view in Gbrowse: Chr15:5874997..5889601

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
XP_004928585.1ATP-binding cassette sub-family F member 1 isoform X10.01734

ORF sequence (2595 bp)

ATGTCGAAAAAGAAAGGAAACAAAAAAAATCAAGATTTAGATGACGATTTCGATGAAAAGCCTTCAGTCGTGAATGAAAAGACAGAACTAACCTCTAAAAATAAAGGAAAAGGCAAGAAGAAGAATAAAACTGGAGATTGTAGCGATAGCGACGAAGAGAACATAAAGAAAGTTCCAGTTTCAGACGAAGAGGACGTCCCGAAACCGGCTGCCAAAAAGTCACAAAAGAAAGGAAAGAGTAAAAAAAAGGGTGCTGATAGGTCAGATGATGAAGAGGATGATAACAAATCCATTATCAACAATACAACAAATGTTTCATCAAAGCCAGCTAAACTTGCAAAAAAGAAAAAAGGGAAAGGTAAGAAAGATGATGATTGGTCTTCGGAAGGCAGTGATGTAGATCTCAAAATGGCTTCAGATGAAGATGTTGCAAAGCCTGTTGGTAAGAAGAAAACCAAGGGTAAAAAGGATGACTTACCTGATGAAGACAGTGACAAAGAATTGAAAATTGAAGCTTCAGAAGATGATGAATTAGTCATACCTTTAGTAAAAAGTAAAGGAAAACATAAAAAGAAGAATAATATGGATGATATTGAGGCAGAGTTAAAGAAATTTGAAATAAAAGATCCAGAGCATGAAGAGAAATCGCTAAAGGGCAAAGATAAAAAGAAAAAGCGACAAGAAGATGAATCCATTGTTGAAGAAAAAGATGACGATAAGGTGACAGAATTGCCTTCAAAAGAAAAAGAAGATTCTGTAGAAAAGAAATTGAGCCACAAAGAAAAGAAGAAACTGAAGAAACAGCAGGAGTATGAGAAACAGATGGAATTGATGACAAAAAAAGGTGGTCAGGGGCACAGTGAACTTGATGCAAACTTCACGGTCAGTCAGGCACAGAAAACAGCTGGTCAAATGGCAGCCCTAGAAAACGCAGTAGACATAAAAGTCGAAAACTTCTCGATCAGTGCGAAAGGAAAAGATTTATTCTTGAACGCGAATCTCTTGATTGCCAACGGACGTCGATATGGTTTGGTCGGGCCTAATGGACACGGAAAAACAACTTTATTGAGGCATTTAGCACAACGCGCCTTCCCGCTCCCGCCCCATATAGACATACTGTTGTGCGAGCAAGAGGTGACGGCCAGTGATATGTCAGCTGTAGATACGCTCCTCGAATCTGATGTTAAGAGAACCGAATTACTAAAGGAATGCAAAGAGCTTGAAGCTGAAACAGAGAAAGGCAACCTCAGCAAACAGGATAGACTTAATGAGGTTTACGCAGAACTGAAAGCGATAGGAGCGGACGCGGCTGAGCCTCGAGCGCGCCGTATCCTCGCGGGTCTGGGCTTCAGCCGTGAGATGCAGGATCGACCCACCAAGAACTTCTCCGGTGGATGGAGAATGAGAGTTTCGCTCGCTAGAGCCCTGTACATAGAACCGACTCTGCTGTTACTAGACGAGCCTACGAACCATTTAGATCTGAACGCCGTGATCTGGTTAGACAATTACCTGCAAGGATGGAAGAAGACGTTACTAGTGGTATCTCACGATCAATCTTTCTTGGATAACGTTTGCAACGAAATCATACATTTAGATCAACAGAAATTGTTTTATTACAAAGGCAATTATTCGATGTTCAAGAAAATGTACGCACAGAAACGAAAGGAGATGATCAAGGAATATGAGAAACAAGAGAAGAGGATAAAGGAACTGAAGGCCCACGGACAGTCCAAGAAGCAAGCCGAAAAGAAGCAGAAGGATGCGTTGACGCGGAAACAGGAGAAGAACCGCAGCAAGGCGCAGCGCGAGGACGAGGACGGCGCCGCGCCCGTCGCCCTGCTGCAGCGGCCTAAGGAGTACATCGTCAAGTTCAGCTTCCCCGACCTGTCGCCGCTGCAGCCGCCCATCCTGGGACTGCACGACGTGGATTTCAACTTCCCCGGTCAGAAGCCTCTCTTCAAGGGCGTGAACTTCGGTATCGATCTTAATTCTCGTATCGCGATCGTGGGCCCCAACGGAGTCGGGAAATCGACGTTCCTGAAGCTACTCGTCGGCGAATTGACTCCTATACGCGGCGAACTGTTTAAGAACCACAGATTGAGGATAGGCAGATTCGACCAGCACTCTGGCGAGCACCTGACGGCGGAGGAGACGCCGGCGGAGTACCTGCAGCGCTTGTTCGGTCTGCAGTACGAGAAGGCGAGGAAGGCGCTCGGCACGTTCGGGCTGGCGAGCCACGCGCACATCATCAAGATGAAAGACCTCAGCGGCGGACAGAAGGCCCGCGTGGCGCTCGCCGAAATGACCCTCATGGGGCCCGACGTTATCATTCTGGATGAACCCACAAATAACTTGGACATCGAGAGTATAGACGCGTTGGCCGAAGCGATCAACGACTACAAGGGGGGCGTGGTCATAGTGTCCCACGACGAACGACTTATCAGAGAGACGGATTGCGCGCTCTACGTCATCGAAGATCAGACCATCAACGAGGTCGACGGTGACTTCGACGATTACCGTAAGGAGCTCCTCGAGAGCCTCGGGGAAACGGTCAACTCACCATCCATCATCGCTAACCAAGCAGTCCAACAATGA

Protein sequence (864 aa)

MSKKKGNKKNQDLDDDFDEKPSVVNEKTELTSKNKGKGKKKNKTGDCSDSDEENIKKVPVSDEEDVPKPAAKKSQKKGKSKKKGADRSDDEEDDNKSIINNTTNVSSKPAKLAKKKKGKGKKDDDWSSEGSDVDLKMASDEDVAKPVGKKKTKGKKDDLPDEDSDKELKIEASEDDELVIPLVKSKGKHKKKNNMDDIEAELKKFEIKDPEHEEKSLKGKDKKKKRQEDESIVEEKDDDKVTELPSKEKEDSVEKKLSHKEKKKLKKQQEYEKQMELMTKKGGQGHSELDANFTVSQAQKTAGQMAALENAVDIKVENFSISAKGKDLFLNANLLIANGRRYGLVGPNGHGKTTLLRHLAQRAFPLPPHIDILLCEQEVTASDMSAVDTLLESDVKRTELLKECKELEAETEKGNLSKQDRLNEVYAELKAIGADAAEPRARRILAGLGFSREMQDRPTKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLVVSHDQSFLDNVCNEIIHLDQQKLFYYKGNYSMFKKMYAQKRKEMIKEYEKQEKRIKELKAHGQSKKQAEKKQKDALTRKQEKNRSKAQREDEDGAAPVALLQRPKEYIVKFSFPDLSPLQPPILGLHDVDFNFPGQKPLFKGVNFGIDLNSRIAIVGPNGVGKSTFLKLLVGELTPIRGELFKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFGLQYEKARKALGTFGLASHAHIIKMKDLSGGQKARVALAEMTLMGPDVIILDEPTNNLDIESIDALAEAINDYKGGVVIVSHDERLIRETDCALYVIEDQTINEVDGDFDDYRKELLESLGETVNSPSIIANQAVQQ

Corresponding sequences in KAIKObase version 1

BMgn007869

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
PANTHERPTHR19211- 1838532.9e-276 -
PANTHERPTHR19211:SF105- 1838532.9e-276 -
SUPERFAMILYSSF52540- 3105681.2e-43 IPR027417
Gene3D3.40.50.300- 3116039.3e-57 -
CDDcd03221ABCF_EF-3 3145355.4e-46 -
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 31455815.24 IPR003439
PfamPF00005ABC transporter 3314902.5e-19 IPR003439
SMARTSM00382- 3385415.3e-09 IPR003593
ProSitePatternsPS00211ABC transporters family signature. 462476- IPR017871
PfamPF12848ABC transporter 5295943.8e-06 IPR032781
Gene3D3.40.50.300- 6138547.7e-53 -
SUPERFAMILYSSF52540- 6178353.6e-41 IPR027417
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 63785116.767 IPR003439
CDDcd03221ABCF_EF-3 6398281.1e-48 -
PfamPF00005ABC transporter 6547832.9e-22 IPR003439
SMARTSM00382- 6628302.9e-12 IPR003593
ProSitePatternsPS00211ABC transporters family signature. 755769- IPR017871

InterPro assignment

InterPro IDInterPro description
IPR003439ABC transporter-like
IPR003593AAA+ ATPase domain
IPR017871ABC transporter, conserved site
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR032781ABC-transporter extension domain

Gene ontology (GO) assignment

GO categoryGO IDGO description
molecular functionGO:0005524ATP binding
molecular functionGO:0016887ATPase activity
SpeciesAccession
Danaus plexippusDPOGS213110
Heliconius melpomeneHMEL006544g1.t1
Manduca sextaXP_030038284.1
Plutella xylostellag26425.t1
Spodoptera frugiperda (corn)GSSPFG00021745001-PA
Spodoptera frugiperda (rice)SFRICE008695-PA
Acyrthosiphon pisumXP_008183032.2
Aedes aegyptiAAEL001101-PA
Anopheles gambiaeAGAP012249-PA
Apis melliferaXP_623255.1
Drosophila melanogasterFBpp0073367
FBpp0310240
Tribolium castaneumXP_971562.1
Homo sapiensNP_001081.1
Mus musculusNP_038882.1

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO08815:

Expression data of alternative splicing isoform(s) of KWMTBOMO08815:

MSTRG.6021.1 (position: Chr15:5873852..5889635)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO08815:

Expression data of alternative splicing isoform(s) of KWMTBOMO08815:

MSTRG.6021.1 (position: Chr15:5873852..5889635)