KWMTBOMO05851

Position

ChromosomeChr10
Start12477711
End12490948
Strand+

view in Gbrowse: Chr10:12477711..12490948

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
XP_028030472.1ATP-binding cassette sub-family F member 30.01463

ORF sequence (2121 bp)

ATGGCTGGCTGTGGAGACTTCATCAAGAGTCAGTTTCCATTGATCGATGACGAATTAATGAAATATGTGGAAGATATCTTGTGCAACAGCGCTGATGAGTTTGAAGACACAGAGGAAATTTTTGAGGCCGTTGGCGAAGTTTTACAAGGCATATCTGAGAAATCTGAGAAAGACATTAAAGACATATGTGGAAAACTTCTACACATGTTACAACCTGACAAAGGATCGAAGAACAATGGGCCTACGAAAATTTTGGATGCACCAATACATTTAGCTTCAATGACCCAGACTAATTATAATGACACAGATGATCTCAAAAGTATATGGATGCAAACAAGGGATGATAGTTTGAAAGTAGATGCTAGAAAATTAGAGAAAGCCGAAGCTAAATTACAACAGAAGCAACAGAAACAAAAAGAGGTAAAAGCACCAACAGCCACACCACTATTACAAACTGCGACTGCATCACAAGTAACATCGAAAAAAGACAGCAAACTTGAAGCTAAAGGGACAAATAGAACACAAGACATAAGGATAGAAAACTTTGACATAGCGTATGGAGATCGGGTATTATTACAAGGTGCCGACTTGATACTTGCATTTGGACGAAGATACGGCTTAGTCGGAAGAAATGGTCTCGGTAAAACAACTCTCCTACGAATGATATCCAGTAAACAGTTGAAGATTCCATCGCATATAACTATCCTGCATGTGGAGCAGGAGGTTGTAGGAGATGACACCATAGCCCTGCAGAGCGTTCTTGAATGTGATACCATTAGAGAAGGCCTATTAAAAAAAGAAAGGGATATAACTGCTGCTATAAATAATGGCTCCACAGATCCGCAGCTCTCGTCCGAGTTGAGTTCAATATACGTGCAACTACAGAACATAGAGGCGGACAAGGCGCCCGCCCGGGCTTCGGTCATATTGAACGGCTTGGGTTTTACAACGGAGATGCAGGCAAGACCCACCAAGACCTTCTCCGGTGGATGGAGAATGAGATTGGCTTTGGCAAGAGCACTGTTTTCTACCCCTGACCTGTTGTTACTCGACGAACCGACCAACATGTTGGACATAAAGGCGATCATCTGGTTAGAAAACTATCTACAGAAGTGGCCCACTACCCTGTTAGTCGTCTCTCACGACAGAAATTTCTTGGACACCGTACCTACAGATATAATGCATTTACACACCCAAAGGATAGATACGTATAGGGGTAACTACGAACAGTTCCACAAGACAAAGACTGAGAAGCTGAAGAATCAGCAGCGCGAGTACGAGGCGCAGCAGCAGCACCGGGCGCACACGCAGGAGTTCATCGACCGGTTCCGTTACAACGCGAACCGCGCCTCCTCCGTGCAGAGCAAGATCAAAATGCTCGATAAACTTCCAGAACTGAAACCAGTCGAGAAGGAAATAGACGTGGTCCTGCGGTTTCCGGAGACAGAGCCGCTCTCGCCCCCCATATTGCAGCTCAACGAAGTCGGCTTCTACTATTCAAAGGACAAAGTCATATTCACAAATGTTAATCTGGGAGCGACCCTAGAATCTAGGATATGTATTGTGGGCGATAATGGCGCTGGCAAAACAACATTGCTGAAGATCATAATGGGTATACTATCGCCAACGAACGGGATCCGCACCGTGCACAGAGGGCTCAAGTTCGGTTACTTCTCGCAGCACCACGTCGATCAGCTCGAGATGAACGTCAACTCTGTTGAGTTGCTACGGAACAGTTATCCAGGTAAACCGATAGAGGAATACAGGAGGCAGTTGGGTAGTTTCGGAGTGAGCGGCGACCTCGCGTTACAGACGATAGGCAGCTTGTCCGGGGGGCAGAAGTCGAGGGTGGCCTTCGCCAGGATGTGTATGGGAAACCCTAACTTCCTAGTTCTGGACGAGCCCACCAATCATCTGGACATCGAAACGATTGAGGCTCTAGGAAAAGGAATAAACAAATACACTGGTGGCGTGATATTGGTATCTCACGACGAACGGCTAATACGGATGGTCTGCAAGGAGCTTTGGGTCTGCGGGAACGGCTGCGTCACCAGTATAGAAGGAGGATTCGACGAATATCGCAAGATAGTCGAAAGGGAATTAGAAGCACAGAATAAATAG

Protein sequence (706 aa)

MAGCGDFIKSQFPLIDDELMKYVEDILCNSADEFEDTEEIFEAVGEVLQGISEKSEKDIKDICGKLLHMLQPDKGSKNNGPTKILDAPIHLASMTQTNYNDTDDLKSIWMQTRDDSLKVDARKLEKAEAKLQQKQQKQKEVKAPTATPLLQTATASQVTSKKDSKLEAKGTNRTQDIRIENFDIAYGDRVLLQGADLILAFGRRYGLVGRNGLGKTTLLRMISSKQLKIPSHITILHVEQEVVGDDTIALQSVLECDTIREGLLKKERDITAAINNGSTDPQLSSELSSIYVQLQNIEADKAPARASVILNGLGFTTEMQARPTKTFSGGWRMRLALARALFSTPDLLLLDEPTNMLDIKAIIWLENYLQKWPTTLLVVSHDRNFLDTVPTDIMHLHTQRIDTYRGNYEQFHKTKTEKLKNQQREYEAQQQHRAHTQEFIDRFRYNANRASSVQSKIKMLDKLPELKPVEKEIDVVLRFPETEPLSPPILQLNEVGFYYSKDKVIFTNVNLGATLESRICIVGDNGAGKTTLLKIIMGILSPTNGIRTVHRGLKFGYFSQHHVDQLEMNVNSVELLRNSYPGKPIEEYRRQLGSFGVSGDLALQTIGSLSGGQKSRVAFARMCMGNPNFLVLDEPTNHLDIETIEALGKGINKYTGGVILVSHDERLIRMVCKELWVCGNGCVTSIEGGFDEYRKIVERELEAQNK

Corresponding sequences in KAIKObase version 1

BMgn006964

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
PANTHERPTHR19211- 177000.0 -
PANTHERPTHR19211:SF45- 177000.0 -
Gene3D3.40.50.300- 1424363.1e-56 -
SUPERFAMILYSSF52540- 1754303.0e-42 IPR027417
CDDcd03221ABCF_EF-3 1774005.4e-50 -
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 17742315.606 IPR003439
PfamPF00005ABC transporter 1943554.1e-19 IPR003439
SMARTSM00382- 2014074.0e-10 IPR003593
ProSitePatternsPS00211ABC transporters family signature. 327341- IPR017871
PfamPF12848ABC transporter 3944721.1e-24 IPR032781
Gene3D3.40.50.300- 4537069.5e-50 -
SUPERFAMILYSSF52540- 4756862.6e-43 IPR027417
CDDcd03221ABCF_EF-3 4906813.3e-52 -
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 49070514.699 IPR003439
PfamPF00005ABC transporter 5076374.7e-23 IPR003439
SMARTSM00382- 5156826.1e-11 IPR003593

InterPro assignment

InterPro IDInterPro description
IPR003439ABC transporter-like
IPR003593AAA+ ATPase domain
IPR017871ABC transporter, conserved site
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR032781ABC-transporter extension domain

Gene ontology (GO) assignment

GO categoryGO IDGO description
molecular functionGO:0005524ATP binding
molecular functionGO:0016887ATPase activity
SpeciesAccession
Danaus plexippusDPOGS202121
Heliconius melpomeneHMEL014601g1.t1
Manduca sextaXP_030033205.1
Plutella xylostellag24589.t1
Spodoptera frugiperda (corn)GSSPFG00016610001-PA
GSSPFG00016612001-PA
Spodoptera frugiperda (rice)SFRICE004375-PA
Acyrthosiphon pisumXP_001946527.2
Aedes aegyptiAAEL010359-PA
Anopheles gambiaeAGAP012005-PA
Apis melliferaXP_397094.2
Drosophila melanogasterFBpp0074708
Tribolium castaneumXP_972814.1
Homo sapiensNP_060828.2
Mus musculusNP_038880.1

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO05851:

Expression data of alternative splicing isoform(s) of KWMTBOMO05851:

MSTRG.2003.1 (position: Chr10:12477711..12490938)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO05851:

Expression data of alternative splicing isoform(s) of KWMTBOMO05851:

MSTRG.2003.1 (position: Chr10:12477711..12490938)