Position
| Chromosome | Chr7 |
| Start | 7577888 |
| End | 7588510 |
| Strand | - |
view in Gbrowse: Chr7:7577888..7588510
Most similar sequence in NCBI nr database
| Accession | Description | E-value | Score |
|---|---|---|---|
| XP_028038962.1 | ATP-binding cassette sub-family E member 1 | 0.0 | 1258 |
ORF sequence (1827 bp)
ATGTCTCGACGAAAAGATCACGAGGAAACCGACAAGCTAACTCGTATCGCTATTGTGAATGCTGATCGCTGCAAGCCAAAGAGATGTAGGCAGGAATGTAAGAAGAGTTGTCCTGTTGTACGTATGGGAAAACTCTGCATCGAAGTCACTCCTAATGACAAGATAGCCACCATCTCTGAGGAGCTATGTATCGGTTGTGGTATTTGTGTGAAGAAATGTCCCTTTGATGCTATCACCATCATCAATATCCCATCTAACTTGGAGAAACACACTACCCACCGTTACTCCAAAAACTCATTCAAGCTCCATCGCCTGCCTATCCCAAGACCAGGAGAAGTTCTAGGTCTTGTTGGCCAGAACGGTATAGGAAAGTCTACTGCACTGAAGATTCTTGCTGGCAAGCAGAAGCCCAACTTGGGTCGTTACACTGACCCTCCAGATTGGCAAGAGATACTTGCTCATTTCCGGGGCTCTGAGCTGCAAAATTACTTCACAAAGATCCTCGAAGATGATCTAAAGGCGCTCATTAAGCCTCAATATGTAGATCAGATCCCTAAAGCTGTAAAGGGAACTGTCGGTCAACTATTAGACAAAAAAGATGAAATGAAAAACCAATCTGTAATATGTAGAATGCTTGATCTATCACACATCCGTGATCGTGAGATTGCGGCACTTTCCGGAGGAGAGTTGCAGCGTTTTGCATGTGCCATGGTGTGCATTCAAAATGGGGATATATTTATGTTTGATGAGCCATCCTCATATCTAGATGTAAAGCAACGACTTAACGCTGCCCGCACAATAAGATCTCTTATCCACCCTGACAAGTTCATCATTGTTGTGGAACATGACTTGTCAGTGTTGGATTATCTCTCAGATTTTATCTGTTGTCTTTACGGTGTACCTGGTGCATATGGTGTTGTGACTATGCCTTTCTCCGTTAGAGAAGGTATAAACATATTCCTTGATGGGTTTGTACCCACCGAAAACATGAGATTCCGTACTGAATCGCTGGTGTTCAAGGTAGCTGAGTCAGCTACCGAAGAAGAGATAAAAAGGATGAACCATTATGAATACCCAGAGATGTCTAAAATGATGGGTGATTTTGGGTTGCGTGTGATGCCTGGAGAGTTCTCAGATTCTGAGATTTTAGTATTACTTGGTGAAAATGGGACTGGGAAGACAACATTTATTAGAATGTTGGCTGGAAATCTTGAACCTGATGAAGGTTCAGGTCAACTTCCGCAGTTACACATTAGTTACAAACCCCAAAAGATTTCACCGAAATCACAGGGACTTGTCAGGAGTTTACTGCATGACAAGATTAGAGATGCTTATATACATCCACAGTTCCTCACTGATGTGATGAAGCCAATGAAAATCGAAGAAATTATGGACCAGGAAGTCCAAAATCTATCTGGTGGTGAGTTACAGCGAGTAGCTCTCGTGCTGTGTCTTGGTAAACCTGCTGATGTTTACCTTATTGATGAACCTTCAGCTTACTTGGATTCTGAACAGCGTTTGGTAGCAGCTAAAGTAATTAAAAGGTTCATCCTCCATGCCAAACGCACTGGCTTTGTTGTCGAGCACGACTTTATAATGGCTACATATCTAGCTGATCGAGTAATCGTGTTTGAGGGTACACCTTCGTCAAATGCGACCGCACATGCGCCTCAATCGCTCCTCAATGGGATGAACAAATTCCTGGAACTCTTGGGAATCACCTTCCGCAGGGATCCTAATAATTTCAGACCGAGGATAAACAAACATGCATCAGTGAAGGATATAGAACAAAAGCGAGCCGGTCAATATTTCTTCTTGGAAGACTAG
Protein sequence (608 aa)
MSRRKDHEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYTDPPDWQEILAHFRGSELQNYFTKILEDDLKALIKPQYVDQIPKAVKGTVGQLLDKKDEMKNQSVICRMLDLSHIRDREIAALSGGELQRFACAMVCIQNGDIFMFDEPSSYLDVKQRLNAARTIRSLIHPDKFIIVVEHDLSVLDYLSDFICCLYGVPGAYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLVFKVAESATEEEIKRMNHYEYPEMSKMMGDFGLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELLGITFRRDPNNFRPRINKHASVKDIEQKRAGQYFFLED
Corresponding sequences in KAIKObase version 1
BMgn010129Domains and motifs
| Database | ID | Description | Start | End | Evalue | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3.40.50.300 | - | 3 | 339 | 1.3e-81 | - |
| SUPERFAMILY | SSF54862 | - | 9 | 151 | 2.0e-17 | - |
| PANTHER | PTHR19248 | - | 11 | 606 | 0.0 | IPR013283 |
| PANTHER | PTHR19248:SF16 | - | 11 | 606 | 0.0 | - |
| Pfam | PF04068 | Possible Fer4-like domain in RNase L inhibitor, RLI | 14 | 45 | 1.6e-14 | IPR007209 |
| ProSiteProfiles | PS51379 | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 15 | 45 | 6.559 | IPR017896 |
| ProSiteProfiles | PS51379 | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 54 | 83 | 11.045 | IPR017896 |
| Pfam | PF00037 | 4Fe-4S binding domain | 57 | 79 | 4.7e-09 | IPR017896 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 63 | 74 | - | IPR017900 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 78 | 323 | 12.392 | IPR003439 |
| CDD | cd03236 | ABC_RNaseL_inhibitor_domain1 | 86 | 340 | 1.6e-168 | IPR034348 |
| SUPERFAMILY | SSF52540 | - | 103 | 297 | 1.8e-30 | IPR027417 |
| Pfam | PF00005 | ABC transporter | 110 | 252 | 2.0e-15 | IPR003439 |
| SMART | SM00382 | - | 110 | 301 | 4.7e-08 | IPR003593 |
| Gene3D | 3.40.50.300 | - | 340 | 606 | 1.2e-42 | - |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 350 | 571 | 15.46 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 376 | 499 | 1.5e-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | - | 376 | 545 | 3.9e-32 | IPR027417 |
| SMART | SM00382 | - | 379 | 549 | 1.5e-10 | IPR003593 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 471 | 485 | - | IPR017871 |
InterPro assignment
| InterPro ID | InterPro description |
|---|---|
| IPR003439 | ABC transporter-like |
| IPR003593 | AAA+ ATPase domain |
| IPR007209 | RNase L inhibitor RLI, possible metal-binding domain |
| IPR013283 | RLI1 |
| IPR017871 | ABC transporter, conserved site |
| IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain |
| IPR017900 | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR034348 | RLI, domain 1 |
Gene ontology (GO) assignment
| GO category | GO ID | GO description |
|---|---|---|
| molecular function | GO:0005524 | ATP binding |
| molecular function | GO:0016887 | ATPase activity |
| Species | Accession |
|---|---|
| Danaus plexippus | DPOGS200951 |
| Heliconius melpomene | HMEL014452g2.t1 |
| Manduca sexta | XP_030031454.1 |
| Plutella xylostella | g33835.t1 |
| Spodoptera frugiperda (corn) | GSSPFG00019931001-PA |
| Spodoptera frugiperda (rice) | SFRICE009150-PA |
| Acyrthosiphon pisum | XP_008183576.1 |
| Aedes aegypti | AAEL010059-PA |
| Anopheles gambiae | AGAP002182-PA |
| Apis mellifera | XP_006569310.1 |
| Drosophila melanogaster | FBpp0076284 FBpp0076285 |
| Tribolium castaneum | XP_008199227.1 XP_968009.1 |
| Homo sapiens | NP_001035809.1 NP_002931.2 |
| Mus musculus | NP_056566.2 |
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO03987:
Expression data of alternative splicing isoform(s) of KWMTBOMO03987:
MSTRG.20209.1 (position: Chr7:7577888..7581083)
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO03987:
Expression data of alternative splicing isoform(s) of KWMTBOMO03987:
MSTRG.20209.1 (position: Chr7:7577888..7581083)