KWMTBOMO03987

Position

ChromosomeChr7
Start7577888
End7588510
Strand-

view in Gbrowse: Chr7:7577888..7588510

Most similar sequence in NCBI nr database

AccessionDescriptionE-valueScore
XP_028038962.1ATP-binding cassette sub-family E member 10.01258

ORF sequence (1827 bp)

ATGTCTCGACGAAAAGATCACGAGGAAACCGACAAGCTAACTCGTATCGCTATTGTGAATGCTGATCGCTGCAAGCCAAAGAGATGTAGGCAGGAATGTAAGAAGAGTTGTCCTGTTGTACGTATGGGAAAACTCTGCATCGAAGTCACTCCTAATGACAAGATAGCCACCATCTCTGAGGAGCTATGTATCGGTTGTGGTATTTGTGTGAAGAAATGTCCCTTTGATGCTATCACCATCATCAATATCCCATCTAACTTGGAGAAACACACTACCCACCGTTACTCCAAAAACTCATTCAAGCTCCATCGCCTGCCTATCCCAAGACCAGGAGAAGTTCTAGGTCTTGTTGGCCAGAACGGTATAGGAAAGTCTACTGCACTGAAGATTCTTGCTGGCAAGCAGAAGCCCAACTTGGGTCGTTACACTGACCCTCCAGATTGGCAAGAGATACTTGCTCATTTCCGGGGCTCTGAGCTGCAAAATTACTTCACAAAGATCCTCGAAGATGATCTAAAGGCGCTCATTAAGCCTCAATATGTAGATCAGATCCCTAAAGCTGTAAAGGGAACTGTCGGTCAACTATTAGACAAAAAAGATGAAATGAAAAACCAATCTGTAATATGTAGAATGCTTGATCTATCACACATCCGTGATCGTGAGATTGCGGCACTTTCCGGAGGAGAGTTGCAGCGTTTTGCATGTGCCATGGTGTGCATTCAAAATGGGGATATATTTATGTTTGATGAGCCATCCTCATATCTAGATGTAAAGCAACGACTTAACGCTGCCCGCACAATAAGATCTCTTATCCACCCTGACAAGTTCATCATTGTTGTGGAACATGACTTGTCAGTGTTGGATTATCTCTCAGATTTTATCTGTTGTCTTTACGGTGTACCTGGTGCATATGGTGTTGTGACTATGCCTTTCTCCGTTAGAGAAGGTATAAACATATTCCTTGATGGGTTTGTACCCACCGAAAACATGAGATTCCGTACTGAATCGCTGGTGTTCAAGGTAGCTGAGTCAGCTACCGAAGAAGAGATAAAAAGGATGAACCATTATGAATACCCAGAGATGTCTAAAATGATGGGTGATTTTGGGTTGCGTGTGATGCCTGGAGAGTTCTCAGATTCTGAGATTTTAGTATTACTTGGTGAAAATGGGACTGGGAAGACAACATTTATTAGAATGTTGGCTGGAAATCTTGAACCTGATGAAGGTTCAGGTCAACTTCCGCAGTTACACATTAGTTACAAACCCCAAAAGATTTCACCGAAATCACAGGGACTTGTCAGGAGTTTACTGCATGACAAGATTAGAGATGCTTATATACATCCACAGTTCCTCACTGATGTGATGAAGCCAATGAAAATCGAAGAAATTATGGACCAGGAAGTCCAAAATCTATCTGGTGGTGAGTTACAGCGAGTAGCTCTCGTGCTGTGTCTTGGTAAACCTGCTGATGTTTACCTTATTGATGAACCTTCAGCTTACTTGGATTCTGAACAGCGTTTGGTAGCAGCTAAAGTAATTAAAAGGTTCATCCTCCATGCCAAACGCACTGGCTTTGTTGTCGAGCACGACTTTATAATGGCTACATATCTAGCTGATCGAGTAATCGTGTTTGAGGGTACACCTTCGTCAAATGCGACCGCACATGCGCCTCAATCGCTCCTCAATGGGATGAACAAATTCCTGGAACTCTTGGGAATCACCTTCCGCAGGGATCCTAATAATTTCAGACCGAGGATAAACAAACATGCATCAGTGAAGGATATAGAACAAAAGCGAGCCGGTCAATATTTCTTCTTGGAAGACTAG

Protein sequence (608 aa)

MSRRKDHEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYTDPPDWQEILAHFRGSELQNYFTKILEDDLKALIKPQYVDQIPKAVKGTVGQLLDKKDEMKNQSVICRMLDLSHIRDREIAALSGGELQRFACAMVCIQNGDIFMFDEPSSYLDVKQRLNAARTIRSLIHPDKFIIVVEHDLSVLDYLSDFICCLYGVPGAYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLVFKVAESATEEEIKRMNHYEYPEMSKMMGDFGLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELLGITFRRDPNNFRPRINKHASVKDIEQKRAGQYFFLED

Corresponding sequences in KAIKObase version 1

BMgn010129

Domains and motifs

DatabaseIDDescriptionStartEndEvalueInterPro ID
Gene3D3.40.50.300- 33391.3e-81 -
SUPERFAMILYSSF54862- 91512.0e-17 -
PANTHERPTHR19248- 116060.0 IPR013283
PANTHERPTHR19248:SF16- 116060.0 -
PfamPF04068Possible Fer4-like domain in RNase L inhibitor, RLI 14451.6e-14 IPR007209
ProSiteProfilesPS513794Fe-4S ferredoxin-type iron-sulfur binding domain profile. 15456.559 IPR017896
ProSiteProfilesPS513794Fe-4S ferredoxin-type iron-sulfur binding domain profile. 548311.045 IPR017896
PfamPF000374Fe-4S binding domain 57794.7e-09 IPR017896
ProSitePatternsPS001984Fe-4S ferredoxin-type iron-sulfur binding region signature. 6374- IPR017900
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 7832312.392 IPR003439
CDDcd03236ABC_RNaseL_inhibitor_domain1 863401.6e-168 IPR034348
SUPERFAMILYSSF52540- 1032971.8e-30 IPR027417
PfamPF00005ABC transporter 1102522.0e-15 IPR003439
SMARTSM00382- 1103014.7e-08 IPR003593
Gene3D3.40.50.300- 3406061.2e-42 -
ProSiteProfilesPS50893ATP-binding cassette, ABC transporter-type domain profile. 35057115.46 IPR003439
PfamPF00005ABC transporter 3764991.5e-18 IPR003439
SUPERFAMILYSSF52540- 3765453.9e-32 IPR027417
SMARTSM00382- 3795491.5e-10 IPR003593
ProSitePatternsPS00211ABC transporters family signature. 471485- IPR017871

InterPro assignment

InterPro IDInterPro description
IPR003439ABC transporter-like
IPR003593AAA+ ATPase domain
IPR007209RNase L inhibitor RLI, possible metal-binding domain
IPR013283RLI1
IPR017871ABC transporter, conserved site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR034348RLI, domain 1

Gene ontology (GO) assignment

GO categoryGO IDGO description
molecular functionGO:0005524ATP binding
molecular functionGO:0016887ATPase activity
SpeciesAccession
Danaus plexippusDPOGS200951
Heliconius melpomeneHMEL014452g2.t1
Manduca sextaXP_030031454.1
Plutella xylostellag33835.t1
Spodoptera frugiperda (corn)GSSPFG00019931001-PA
Spodoptera frugiperda (rice)SFRICE009150-PA
Acyrthosiphon pisumXP_008183576.1
Aedes aegyptiAAEL010059-PA
Anopheles gambiaeAGAP002182-PA
Apis melliferaXP_006569310.1
Drosophila melanogasterFBpp0076284
FBpp0076285
Tribolium castaneumXP_008199227.1
XP_968009.1
Homo sapiensNP_001035809.1
NP_002931.2
Mus musculusNP_056566.2

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO03987:

Expression data of alternative splicing isoform(s) of KWMTBOMO03987:

MSTRG.20209.1 (position: Chr7:7577888..7581083)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO03987:

Expression data of alternative splicing isoform(s) of KWMTBOMO03987:

MSTRG.20209.1 (position: Chr7:7577888..7581083)