KWMTBOMO02494

Position

Chromosome	Chr5
Start	3445855
End	3466701
Strand	-

view in Gbrowse: Chr5:3445855..3466701

Most similar sequence in NCBI nr database

Accession	Description	E-value	Score
NP_001296549.1	protein white-like	0.0	1212

ORF sequence (1770 bp)

ATGGAGTTGAATAAGGTCCTCTTAGACGAATTCGAAAATAAAGACGCAATTATTGTTAGAAATCTGAAGGTTTGGACGCCAGAAGAGAAGTCAATATGGAGAAAAGTTGCTAAACCAAAAACTGTGATAATCGATAATGTTTCAGCGTGTATAAGGGAAGGGGAATTTGCAGCAATCATCGGGCCGAGTGGAGCAGGAAAAACAACATTTCTAGTGTCGTTAGCCGGGAAATGCACATTACCATTTGAAGGCACCGTTACGATCAACGGTAGAAATGTCAGGGATCTGACGGGTGCCGAGATCGTGCCCCAGTTCGACGTGTTCACGGACAGCTTGACTGTTATGGAGCAACTTGTTTTTATGACAGAAATGAAACTAGGTAACAGTACGAAGCAACCGAACAAATCAATTCTGAATACAGTCATCGAAGAATTCAAACTAAGCGCACACGTTGAAACGCGCATAGGATCATTATCTGGCGGAGAAAGGAGGTTGTTGTCTTTAGCCACTTCGTTCTTATCGAATCCACAAATATTGATATGCGACGAACCCACTACCGGCTTGGATAGTTATAACGCATCACAAGTAATTGGCATATTAAAGAAATTGTCAGCGTCCGGTAAGATTGTCATATGTTCTGTTCATCAACCTTCGTGTGATATCTTCAAAGAGTTTAACTCTATTCTTTTGATGGCTGAGGGAAATCTACTTTTCCATGGAACTCAGGATGCGTGCAAATCGTTCTTTGAAAGCATTGACCTGCATTGCCCGTTGAACTATAATCCAGCAGAATTTTACATACGAGCTGTATCCAATCACAATGGAGTATGTATCAAAAAGATGCTGGAAAATTACCAGGACCAGTCTTTGGACTGTGACGAAACCGGTTTGGAAGTTAACCTAATCTATAAAAAGCCACAAAGAAATTGGCTGAAGCAAGTGCAACTTCTACTGTGGAGGTCTTCTTTGAGCCTGAAGAGCGATTTAAAAAGTTACGTGTTTCAACTGCTCTTGTCTGTGGTAGTAACAGCATCAGTTCTTGGCACTGTCTACAGCGGAGTCACAGGTACCACACAACGTGGAATTCAGGACGTCAGAGGCTTCCTTTGGTTGGTCACGAGCGAAGTTTGTTACGGGCTTGCCTATAGCACCCTCTATGTGTTCAAATATGAAGTCACTCTGTTCAGGAGAGAAGTCGGCATGTACAAATGCTCAGCATATTTCGTTAGCAAATTTTTGAGTTTTATACCAAGGTGCGTTATCTGGCCCATCGCACTGGTGTGTACTACAACCGTTGCGATCGAGTTACCAAACCACGTAATCACCACGATGGAATTTATTGTCGTGCTGATATTTGCTGCGATTGCTTCCATGGCTTATGGTCTCGGTATGTCTGCATTGTTTACATCGACAGGCAACATGGGCGACGTGATGCCTTGCTTCGATCTTCCATTGTTTCTAATGTCAGGAGCATTCCTAACGATCTCAACGTTACCAATATGGTTATATCCCGTGAAATTCATCTCGCACTTCTACTACGCCATGGATACTATCAGCAATCTTTACTGGAGACAGATTCTTTATATTGATTGTCCAGTGAACACAACTACGACGTGCACGAGTAGCGGAGAAGCAGTATTGTACGAAATTGGATATTCTAATAATTTTGTACTACAAAACAGTTTGGGCTTATTACTGGTTACTACTATGTGGGGCTTACTGGGTTATTACGGGATGAAACGAGAAGAGAAAAAGGGTTACGCTTACTGA

Protein sequence (589 aa)

MELNKVLLDEFENKDAIIVRNLKVWTPEEKSIWRKVAKPKTVIIDNVSACIREGEFAAIIGPSGAGKTTFLVSLAGKCTLPFEGTVTINGRNVRDLTGAEIVPQFDVFTDSLTVMEQLVFMTEMKLGNSTKQPNKSILNTVIEEFKLSAHVETRIGSLSGGERRLLSLATSFLSNPQILICDEPTTGLDSYNASQVIGILKKLSASGKIVICSVHQPSCDIFKEFNSILLMAEGNLLFHGTQDACKSFFESIDLHCPLNYNPAEFYIRAVSNHNGVCIKKMLENYQDQSLDCDETGLEVNLIYKKPQRNWLKQVQLLLWRSSLSLKSDLKSYVFQLLLSVVVTASVLGTVYSGVTGTTQRGIQDVRGFLWLVTSEVCYGLAYSTLYVFKYEVTLFRREVGMYKCSAYFVSKFLSFIPRCVIWPIALVCTTTVAIELPNHVITTMEFIVVLIFAAIASMAYGLGMSALFTSTGNMGDVMPCFDLPLFLMSGAFLTISTLPIWLYPVKFISHFYYAMDTISNLYWRQILYIDCPVNTTTTCTSSGEAVLYEIGYSNNFVLQNSLGLLLVTTMWGLLGYYGMKREEKKGYAY

Corresponding sequences in KAIKObase version 1

BMgn002712

Domains and motifs

Database	ID	Description	Start	End	Evalue	InterPro ID
ProSiteProfiles	PS50893	ATP-binding cassette, ABC transporter-type domain profile.	27	258	17.867	IPR003439
PANTHER	PTHR19241	-	29	556	4.9e-104	-
PANTHER	PTHR19241:SF340	-	29	556	4.9e-104	-
Gene3D	3.40.50.300	-	34	253	1.8e-48	-
SUPERFAMILY	SSF52540	-	39	257	2.4e-43	IPR027417
Pfam	PF00005	ABC transporter	45	185	1.6e-23	IPR003439
SMART	SM00382	-	53	235	2.0e-10	IPR003593
ProSitePatterns	PS00211	ABC transporters family signature.	158	172	-	IPR017871
Pfam	PF01061	ABC-2 type transporter	313	520	4.0e-20	IPR013525

InterPro assignment

InterPro ID	InterPro description
IPR003439	ABC transporter-like
IPR003593	AAA+ ATPase domain
IPR013525	ABC-2 type transporter
IPR017871	ABC transporter, conserved site
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene ontology (GO) assignment

GO category	GO ID	GO description
molecular function	GO:0005524	ATP binding
cellular component	GO:0016020	membrane
molecular function	GO:0016887	ATPase activity

Species	Accession
Danaus plexippus	DPOGS201534
Heliconius melpomene	HMEL009082g1.t1
Manduca sexta	XP_030038388.1
Plutella xylostella	g13022.t1
Spodoptera frugiperda (corn)	GSSPFG00022735001-PA
Spodoptera frugiperda (rice)	SFRICE019101-PA
Acyrthosiphon pisum	-
Aedes aegypti	AAEL017188-PA
Anopheles gambiae	AGAP007655-PA
Apis mellifera	XP_016772092.2 XP_395665.6
Drosophila melanogaster	-
Tribolium castaneum	NP_001306946.1
Homo sapiens	-
Mus musculus	-

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO02494:

Expression data of alternative splicing isoform(s) of KWMTBOMO02494:

MSTRG.18313.1 (position: Chr5:3445773..3465143)

MSTRG.18313.2 (position: Chr5:3445855..3466841)

The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.

The Y axis is the abundance value with log₁₀ conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis

For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.

Expression data of KWMTBOMO02494:

Expression data of alternative splicing isoform(s) of KWMTBOMO02494:

MSTRG.18313.1 (position: Chr5:3445773..3465143)

MSTRG.18313.2 (position: Chr5:3445855..3466841)