Position
| Chromosome | Chr1 |
| Start | 4670556 |
| End | 4680073 |
| Strand | - |
view in Gbrowse: Chr1:4670556..4680073
Most similar sequence in NCBI nr database
| Accession | Description | E-value | Score |
|---|---|---|---|
| XP_012551415.1 | ATP-binding cassette sub-family F member 2 isoform X1 | 0.0 | 1297 |
ORF sequence (1869 bp)
ATGCCGTCGGACGCGAAGAAAAGGGCTCAGCAGAAGAAGAAGGAGCAAGCTAGCGGCAGAAACAAGAAGCCGGTGGTTCGTGTGACGAACGAAGACGAAAATGGTATCGGAACTAATGGTATATCCAGGGAAGACCGTGAGCTGACGGCAGAAGAGGCATTGTGCCTTAAGCTAGAAGCTGAAGCGAAAATGAATTCTGAAGCTCGTTCTTGTACTGGGTCACTGGCTGTGCACCCTCGTTCTAGAGATATCAAGATAGCTAACTTTTCAATTACTTTCTATGGGAGTGAGCTACTTCAAGATACTCTCCTGGAGTTGAATTGTGGGCGAAGATATGGGCTAGTCGGACTTAATGGGTGTGGAAAATCATCATTGCTTGCTGCCTTAGGACGCCGTGAGGTTCCTATTCCGGAACACATTGACATATTCCATCTGACTCGAGAAATGCCTGCTTCAGATAAGACTGCACTTCAGTGCGTCATGGAGGTTGACGAGGAGAGAGTCAAACTCGAGAAGCTCGCAGAAATGCTAGCCCACTGTGAAGATGATGAATCACAGGAGCAATTGATGGATGTATACGATCGTCTGGACGATTTGAGCGCCGACACGGCAGAGGCGCGTGCTGCTAATATCCTGCATGGTCTTGGCTTCACCAAGGAAATGCAGCAGAAGGCAACGAAAGACTTCTCCGGAGGTTGGCGTATGCGTATAGCTCTGGCACGAGCGCTATATGTTAAGCCGCACTTACTGCTGCTGGACGAGCCAACAAACCATCTCGATTTGGACGCCTGTGTGTGGCTTGAAGAAGAACTTAAACACTACAAAAGAATTTTAGTGTTGATCTCGCATTCGCAAGACTTCTTGAACGGTGTATGCACGAATATCGTTCATATGAGTAAGCGCCGTTTGAAGTATTACACTGGTAACTATGAAGCCTTCGTTAGGACGCGCATGGAATTGCTAGAGAATCAGATGAAACAGTACAACTGGGAACAAGACCAGATTGCACATATGAAAAACTACATAGCGAGATTCGGTCATGGTTCCGCCAAATTGGCGCGTCAAGCACAGTCCAAAGAAAAGACGTTAGCCAAAATGGTGGCACAGGGTCTCACCGAGAAGGTGGTTGATGACAAGATACTCAATTTCTACTTTCCGTCTTGTGGGAAAGTACCGCCACCCGTCATCATGGTGCAGAATGTATCATTCAGATACACTGATTCTGGGCCGTGGATATACAAGAATTTGGAATTTGGCATTGACCTTGATACAAGACTTGCTTTGGTTGGACCCAATGGAGCAGGCAAGTCAACGCTACTCAAGCTGCTTTATGGAGATTTAGTGCCTTCGACTGGTATGATCCGTAAAAACTCACATCTTCGTATTGGTCGTTACCACCAACACTTGCACGAGTTGTTGGATCTCGATCTGTCTCCACTTGATTACATGATGAAAGAGTTTCCCGAGGTTCGTGAGCGCGAAGAAATGAGAAAAATCATCGGTCGGTATGGTCTCACTGGGAGGCAGCAGGTGTGTCCCATGCGTCAGTTATCCGACGGGCAGCGTTGTCGTGTTGTATTCGCGTGGTTGGCCTGGCAGACTCCGCACCTGCTGTTATTGGACGAGCCCACTAACCATCTTGATATGGAAACCATCGATGCACTCGCAGACGCCATTAACGACTTTGACGGTGGCATGGTGCTCGTTAGTCACGACTTTAGACTTATTAATCAGGTGGCGAATGAAATTTGGATCTGTGAGAACGGTACTACCACAAAATGGGAGGGTGGTATCCTCAAATACAAAGATCACCTGAAATCTAAGATATTGAAGGATAATGCGGATAGCGCCGCTAAAATACGCAAATAG
Protein sequence (622 aa)
MPSDAKKRAQQKKKEQASGRNKKPVVRVTNEDENGIGTNGISREDRELTAEEALCLKLEAEAKMNSEARSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLGFTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKHYKRILVLISHSQDFLNGVCTNIVHMSKRRLKYYTGNYEAFVRTRMELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVAQGLTEKVVDDKILNFYFPSCGKVPPPVIMVQNVSFRYTDSGPWIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPSTGMIRKNSHLRIGRYHQHLHELLDLDLSPLDYMMKEFPEVREREEMRKIIGRYGLTGRQQVCPMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLINQVANEIWICENGTTTKWEGGILKYKDHLKSKILKDNADSAAKIRK
Corresponding sequences in KAIKObase version 1
BMgn002004Domains and motifs
| Database | ID | Description | Start | End | Evalue | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | PTHR19211 | - | 3 | 613 | 0.0 | - |
| PANTHER | PTHR19211:SF15 | - | 3 | 613 | 0.0 | - |
| SUPERFAMILY | SSF52540 | - | 75 | 337 | 8.9e-41 | IPR027417 |
| CDD | cd03221 | ABCF_EF-3 | 84 | 302 | 4.0e-43 | - |
| Gene3D | 3.40.50.300 | - | 84 | 348 | 3.5e-51 | - |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 84 | 325 | 14.112 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 100 | 257 | 1.1e-21 | IPR003439 |
| SMART | SM00382 | - | 108 | 309 | 6.2e-09 | IPR003593 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 229 | 243 | - | IPR017871 |
| Pfam | PF12848 | ABC transporter | 296 | 369 | 6.1e-22 | IPR032781 |
| Gene3D | 3.40.50.300 | - | 359 | 622 | 4.7e-49 | - |
| SUPERFAMILY | SSF52540 | - | 376 | 592 | 1.1e-42 | IPR027417 |
| CDD | cd03221 | ABCF_EF-3 | 396 | 590 | 3.2e-53 | - |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 396 | 613 | 14.273 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 413 | 545 | 1.5e-21 | IPR003439 |
| SMART | SM00382 | - | 422 | 590 | 2.1e-08 | IPR003593 |
InterPro assignment
| InterPro ID | InterPro description |
|---|---|
| IPR003439 | ABC transporter-like |
| IPR003593 | AAA+ ATPase domain |
| IPR017871 | ABC transporter, conserved site |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR032781 | ABC-transporter extension domain |
Gene ontology (GO) assignment
| GO category | GO ID | GO description |
|---|---|---|
| molecular function | GO:0005524 | ATP binding |
| molecular function | GO:0016887 | ATPase activity |
| Species | Accession |
|---|---|
| Danaus plexippus | DPOGS201401 |
| Heliconius melpomene | HMEL012851g1.t1 |
| Manduca sexta | XP_030027805.1 |
| Plutella xylostella | g23771.t1 |
| Spodoptera frugiperda (corn) | GSSPFG00010341001-PA |
| Spodoptera frugiperda (rice) | SFRICE012479-PA |
| Acyrthosiphon pisum | XP_001947490.1 |
| Aedes aegypti | AAEL010977-PA AAEL010977-PB |
| Anopheles gambiae | AGAP002693-PA |
| Apis mellifera | XP_026298349.1 XP_396698.3 |
| Drosophila melanogaster | FBpp0073872 FBpp0073873 FBpp0309269 |
| Tribolium castaneum | XP_966990.1 |
| Homo sapiens | NP_009120.1 |
| Mus musculus | NP_001177372.1 NP_001346134.1 NP_038881.1 XP_006535790.1 |
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value (transcripts per million (TPM))
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.
Expression data of KWMTBOMO00147:
The expression data was obtained from RNA-seq data of ten tissues/locations.
Three replicates were sequenced from each tissue/location.
The Y axis is the abundance value with log10 conversion (value of transcripts per million (TPM) plus 1 is used to avoid negative output)
The X axis is the tissues/locations with the following abbreviations:
ASG: anterior silk gland; FB: fat body; MG: midgut;
MSG_A: middle silk gland (anterior); MSG_M: middle silk gland (middle); MSG_P: middle silk gland (posterior);
MT: Malpighian tubules; OV: ovary; PSG: posterior silk gland; TT: testis
For more details, please refer to the article "Reference transcriptome data in silkworm Bombyx mori" (Yokoi et al., 2019).
Expression data (TPM) can be obtained from National Bioscience Database Center.